Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 2.6e-311 1072.4 1282 100.0
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 7.2e-155 552.7 1326 51.1
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.1e-107 396.0 1328 46.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.3e-107 393.3 1334 55.5
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-91 342.8 1301 43.7
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.6e-90 337.8 1326 45.5
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 9.9e-88 329.7 1326 47.4
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.1e-82 310.1 1298 46.0
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.7e-76 292.4 1298 40.6
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 4.0e-73 281.2 1325 44.6
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 6.4e-71 273.9 696 34.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.3e-68 266.2 1294 43.0
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.0e-68 265.0 1259 44.0
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.5e-67 262.7 1301 42.0
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 4.8e-66 257.7 1389 42.3
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 3.4e-64 251.5 832 48.2
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.4e-62 246.1 1286 40.2
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.9e-62 245.7 1379 44.9
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.2e-62 245.0 615 40.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 3.2e-62 245.0 1523 36.9
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.3e-60 239.6 693 48.5
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.8e-60 239.2 1297 39.5
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 4.3e-59 234.6 1398 33.6
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.4e-57 229.6 1421 38.5
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 6.9e-57 227.3 586 36.9
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.5e-56 226.1 899 43.9
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.8e-56 224.2 1533 29.7
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.1e-54 219.9 520 52.9
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.2e-54 218.4 579 35.1
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.5e-54 217.6 579 35.2
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.2e-53 216.5 1381 36.3
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 4.6e-53 214.5 1330 36.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.3e-52 212.2 1330 36.2
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 8.7e-52 210.3 475 42.5
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.9e-51 209.1 905 46.0
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 3.3e-51 208.4 617 31.8
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.2e-48 199.9 995 29.8
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.7e-48 197.2 581 34.1
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.0e-47 196.8 1388 34.2
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.7e-47 196.1 612 32.2
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 1.2e-45 189.9 992 35.6
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.6e-45 188.3 1330 45.7
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.4e-44 186.4 767 28.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.1e-43 183.3 612 31.7
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.9e-43 182.6 905 47.2
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.9e-43 182.6 1291 37.8
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 4.3e-43 181.4 1385 38.3
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 9.7e-43 180.3 612 32.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 6.3e-42 177.6 566 50.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 8.2e-42 177.2 1261 41.8
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 8.2e-42 177.2 994 38.9
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-41 176.8 1295 37.6
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 3.4e-40 171.8 224 45.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-39 169.1 612 30.4
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 4.2e-38 164.9 182 50.5
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.6e-37 162.9 1003 24.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.6e-37 161.8 1400 37.3
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 6.1e-37 161.0 1401 34.3
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 7.9e-37 160.6 1387 39.5
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.0e-36 160.2 988 36.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.8e-36 159.5 1264 42.4
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.8e-36 159.5 225 52.4
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-35 156.8 1261 43.0
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 9.7e-35 153.7 182 48.4
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 3.7e-34 151.8 1400 39.4
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.9e-32 144.4 1275 40.3
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 7.7e-32 144.1 1383 35.3
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.0e-31 143.7 567 44.8
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 6.5e-31 141.0 514 34.4
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 5.5e-30 137.9 1332 33.4
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 5.5e-30 137.9 784 37.8
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.7e-29 135.6 1359 36.5
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 5.2e-28 131.3 534 30.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 6.7e-28 131.0 1206 41.4
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.3e-27 128.6 1216 41.6
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.3e-27 128.6 1216 41.6
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.7e-26 126.3 981 30.0
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.2e-26 125.9 477 33.3
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 3.7e-26 125.2 517 43.9
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.3e-23 116.7 1385 35.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.3e-23 116.7 613 24.5
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 3.2e-22 112.1 531 31.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 3.2e-22 112.1 1552 29.8
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.2e-22 111.7 586 33.3
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.2e-22 110.9 214 38.3
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.2e-21 110.2 276 38.0
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.7e-21 109.0 311 32.8
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.7e-21 109.0 1309 34.5
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.7e-21 109.0 930 37.7
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 4.7e-21 108.2 987 32.6
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.4e-20 106.7 1385 37.0
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.4e-20 106.7 143 55.2
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.2e-20 104.8 558 26.9
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 5.2e-20 104.8 1392 35.1
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.2e-19 103.6 212 39.6
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.5e-19 103.2 614 34.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.6e-19 102.4 599 24.5
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 4.4e-19 101.7 142 49.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.3e-18 100.1 590 27.6
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.8e-18 99.0 141 48.2
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 6.3e-18 97.8 187 35.3
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.1e-17 97.1 134 41.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 2.4e-17 95.9 1389 38.0
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-16 93.6 119 56.3
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.6e-16 93.2 1470 29.6
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.6e-16 93.2 508 30.3
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.0e-16 92.8 104 55.8
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 7.7e-16 90.9 533 33.4
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.0e-15 90.5 142 46.5
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.0e-15 90.5 129 48.8
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.3e-15 90.1 858 29.0
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 6.5e-15 87.8 142 45.8
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 6.5e-15 87.8 684 39.2
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.1e-14 87.0 132 47.7
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.9e-14 86.3 852 30.6
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.2e-14 85.5 955 33.8
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 9.4e-14 84.0 479 26.9
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.1e-13 82.8 137 42.3
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.1e-13 82.8 137 42.3
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 4.7e-13 81.6 139 45.3
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 6.1e-13 81.3 218 33.9
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.4e-12 80.1 626 23.2
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-12 80.1 88 56.8
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.6e-11 75.9 141 42.6
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.4e-11 75.5 144 44.4
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.7e-10 73.2 98 43.9
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 2.8e-10 72.4 142 42.3
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.7e-10 72.0 128 43.8
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-09 70.1 179 39.1
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.4e-09 70.1 143 36.4
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 5.4e-09 68.2 276 29.3
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 7.0e-09 67.8 160 40.0
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 9.1e-09 67.4 140 31.4
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 9.1e-09 67.4 611 28.2
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.6e-08 66.6 166 33.1
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.6e-08 66.6 142 41.5
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.0e-07 63.9 222 33.8
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.0e-07 63.9 182 35.2
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-07 63.2 80 51.2
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.3e-07 62.8 222 33.8
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-06 60.5 44 70.5
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.1e-06 60.5 313 25.2
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 1.9e-06 59.7 63 61.9
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 3.3e-06 58.9 142 38.7
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.3e-06 58.9 224 36.6
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.2e-06 58.5 278 28.4


User provided reference genes

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