Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.8e-240 835.5 412 100.0
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 4.2e-149 531.9 328 79.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 5.7e-146 521.5 327 77.4
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 6.3e-145 518.1 329 78.1
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.0e-142 510.8 327 75.2
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 6.3e-137 491.5 367 71.7
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.5e-133 480.3 324 71.6
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 9.4e-133 477.6 325 71.4
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.4e-128 463.8 323 69.7
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.4e-128 463.0 329 69.9
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 2.4e-128 463.0 324 68.5
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 7.0e-128 461.5 323 68.7
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 2.7e-127 459.5 325 68.3
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.5e-127 459.1 330 68.8
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 4.5e-127 458.8 324 67.3
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 4.5e-127 458.8 325 69.5
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 5.9e-127 458.4 324 69.8
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 7.7e-127 458.0 325 68.6
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 7.7e-127 458.0 329 69.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.7e-126 456.8 334 68.0
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 3.8e-126 455.7 316 69.3
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 3.8e-126 455.7 324 67.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.0e-126 455.3 324 68.2
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.5e-125 453.8 325 68.6
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 4.2e-125 452.2 324 68.5
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 5.5e-125 451.8 325 67.7
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 7.2e-125 451.4 325 68.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.2e-125 451.4 324 69.4
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 7.2e-125 451.4 324 68.2
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 9.4e-125 451.1 324 69.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.2e-124 450.7 319 69.3
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.1e-124 449.9 324 68.8
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.4e-123 447.2 324 67.3
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.0e-123 446.0 325 68.6
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 3.0e-123 446.0 324 67.3
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.0e-123 445.7 319 68.7
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 4.0e-123 445.7 324 68.8
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.2e-123 445.3 317 67.8
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 6.8e-123 444.9 316 67.7
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 6.8e-123 444.9 326 66.9
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 6.8e-123 444.9 316 67.7
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 8.8e-123 444.5 327 64.8
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 8.8e-123 444.5 321 67.0
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 1.2e-122 444.1 322 68.3
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.2e-122 444.1 315 67.9
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.5e-122 443.7 326 67.2
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.5e-122 443.7 327 66.7
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 2.0e-122 443.4 325 65.8
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 2.0e-122 443.4 327 66.7
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.6e-122 443.0 344 62.8
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 2.6e-122 443.0 325 66.5
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 3.4e-122 442.6 324 65.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.4e-122 442.6 316 67.7
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.4e-122 442.2 320 68.4
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 5.7e-122 441.8 327 66.4
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.7e-122 441.8 324 67.0
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 7.5e-122 441.4 324 65.7
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 7.5e-122 441.4 325 65.8
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 9.8e-122 441.0 326 65.6
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 9.8e-122 441.0 318 67.9
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 1.3e-121 440.7 326 65.6
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 4.9e-121 438.7 328 65.2
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.1e-120 436.0 325 64.6
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 4.1e-120 435.6 293 71.3
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.2e-119 434.1 327 64.5
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.0e-119 433.3 325 64.3
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.7e-119 433.0 324 65.1
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.5e-119 432.2 325 64.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.9e-118 429.5 324 62.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.9e-118 429.5 324 65.1
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 5.0e-118 428.7 321 65.4
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 5.0e-118 428.7 324 62.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.5e-117 427.2 321 65.1
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.3e-117 426.0 328 66.2
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 4.3e-117 425.6 328 65.9
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 5.6e-117 425.2 321 65.1
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 9.5e-117 424.5 324 65.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.2e-116 424.1 324 64.8
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.1e-116 423.3 321 64.8
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 3.6e-116 422.5 321 64.5
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 2.3e-115 419.9 325 62.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 4.4e-114 415.6 324 63.0
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 4.4e-114 415.6 268 73.5
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 6.4e-113 411.8 328 63.7
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.2e-111 407.5 266 73.3
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 2.7e-111 406.4 328 63.4
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 4.6e-111 405.6 320 60.9
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-110 402.9 326 62.3
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-110 402.9 326 62.0
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 3.9e-110 402.5 328 58.5
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 5.0e-110 402.1 326 62.3
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 5.0e-110 402.1 324 62.3
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.0e-110 402.1 328 62.8
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 7.3e-109 398.3 269 68.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 7.3e-109 398.3 269 68.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 7.3e-109 398.3 350 58.6
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.7e-108 395.6 264 70.8
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 6.2e-108 395.2 293 64.5
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.5e-106 390.6 268 67.9
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.6e-106 389.8 342 55.8
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 2.9e-105 386.3 293 64.8
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.9e-105 386.3 388 52.1
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 3.7e-105 386.0 334 56.9
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 6.4e-105 385.2 268 66.0
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.6e-103 380.6 339 56.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.0e-102 377.9 315 57.1
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.0e-102 377.9 303 60.7
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 3.9e-102 375.9 321 59.8
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.1e-99 367.9 323 57.9
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 2.6e-98 363.2 324 56.5
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 8.3e-97 358.2 320 55.3
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.4e-96 355.5 325 57.8
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 7.8e-95 351.7 341 54.0
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.0e-94 349.7 341 54.5
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 3.0e-94 349.7 245 65.7
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.3e-93 346.3 236 67.8
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 7.1e-88 328.6 324 50.0
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 9.2e-88 328.2 253 60.5
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 5.8e-82 308.9 320 49.4
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.2e-81 307.0 294 52.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.9e-78 296.2 316 44.6
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 6.4e-73 278.9 201 66.7
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.6e-71 274.2 204 67.2
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 7.9e-71 271.9 194 68.0
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 3.3e-69 266.5 185 70.3
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 4.5e-66 256.1 344 42.7
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 6.7e-62 242.3 282 42.6
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 4.3e-61 239.6 240 49.2
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.9e-57 226.1 300 44.0
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.7e-54 215.7 139 74.1
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.6e-52 211.1 156 62.2
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.0e-50 204.1 292 40.4
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.9e-48 197.6 200 52.5
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.3e-46 190.7 162 56.2
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 3.0e-46 190.3 253 39.5
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 3.1e-43 180.3 291 35.4
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 5.3e-35 152.9 155 47.1
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 9.4e-32 142.1 203 39.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.7e-31 140.6 201 39.8
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.9e-30 136.7 125 56.8
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.1e-27 128.6 284 32.4
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 2.6e-26 124.0 117 53.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.4e-22 111.7 121 49.6
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.0e-21 107.8 181 37.6
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.4e-19 101.7 300 28.3
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.4e-19 101.7 89 57.3
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.4e-19 101.7 89 57.3
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 5.3e-19 99.8 76 68.4
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.1e-15 86.3 112 45.5
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.6e-13 80.9 77 50.6
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 1.3e-09 68.6 58 62.1
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 8.5e-09 65.9 57 63.2
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.9e-08 64.7 57 63.2
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.2e-08 63.5 43 62.8


User provided reference genes

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