Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 0.0e+00 2389.0 1299 100.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 0.0e+00 1507.7 1263 65.6
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 0.0e+00 1290.4 1250 60.1
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1163.7 1310 52.9
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 0.0e+00 1160.2 1184 57.9
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 5.3e-307 1058.1 1317 49.3
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 3.2e-304 1048.9 1309 48.9
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 1.0e-302 1043.9 1266 49.1
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 3.9e-302 1042.0 1292 48.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.3e-300 1036.9 1311 48.8
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 4.4e-293 1011.9 1302 47.4
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.3e-292 1008.1 1320 47.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 4.0e-286 988.8 1274 48.7
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.7e-282 976.1 1329 46.1
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.0e-281 974.2 1350 44.8
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 3.6e-279 965.7 1314 47.3
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.0e-278 964.1 1315 46.0
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.4e-275 953.0 1295 46.3
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.0e-274 949.9 1303 45.5
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 7.8e-274 948.0 1287 47.9
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 7.8e-274 948.0 1264 46.3
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.6e-271 940.3 1325 43.8
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.4e-270 937.2 1265 46.7
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.9e-268 928.7 1284 44.3
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.0e-266 923.3 1271 47.3
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 7.8e-266 921.4 1285 45.1
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 6.6e-265 918.3 1281 44.0
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 4.3e-264 915.6 1353 42.9
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 4.7e-263 912.1 1287 45.6
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 4.9e-260 902.1 1293 44.6
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 2.7e-258 896.3 1283 44.6
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 9.5e-256 887.9 1287 44.1
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 6.2e-255 885.2 1259 44.0
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.4e-254 884.0 1264 44.5
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.8e-254 883.6 1290 43.6
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 3.4e-253 879.4 1300 43.5
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 7.6e-253 878.2 1263 43.5
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 5.4e-251 872.1 1260 43.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.2e-242 844.3 1331 43.2
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 7.8e-242 841.6 1272 43.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 5.1e-241 839.0 1330 42.4
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-240 837.8 1281 42.6
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.3e-239 834.3 1273 42.3
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 5.8e-237 825.5 1280 42.3
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 1.2e-234 817.8 1278 43.4
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.1e-233 812.4 1279 41.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.1e-232 811.2 1259 41.5
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.4e-230 804.3 1328 41.4
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.5e-229 799.3 1315 41.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 5.1e-225 785.8 1296 41.9
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.5e-224 784.3 1297 41.4
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.5e-224 783.5 1296 41.9
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 4.9e-220 769.2 1190 42.9
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.4e-219 767.7 871 50.1
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 3.2e-219 766.5 1263 40.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 4.3e-216 756.1 1380 38.6
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.5e-208 731.1 1254 40.6
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.0e-206 721.8 1209 41.6
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 1.1e-200 704.9 1214 41.2
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 6.9e-198 695.7 1250 38.3
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 6.5e-196 689.1 1283 38.9
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 7.4e-192 675.6 1338 37.3
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.5e-189 666.4 1225 40.2
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.8e-188 663.3 1255 39.6
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 3.2e-187 660.2 1071 40.1
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.1e-182 645.2 1246 38.8
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.2e-175 620.9 1264 36.6
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 5.5e-171 606.3 1264 35.5
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 2.1e-170 604.4 1269 35.4
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 2.1e-170 604.4 1257 36.1
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.4e-169 601.7 1264 35.4
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.8e-169 601.3 1266 35.2
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.3e-169 600.9 1251 37.2
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.0e-169 600.1 1234 35.3
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.5e-168 598.2 1270 36.1
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.7e-167 594.7 1267 35.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 6.3e-167 592.8 1239 37.3
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.5e-163 580.9 1275 36.3
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 3.6e-162 577.0 1258 34.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 3.6e-162 577.0 716 46.6
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 7.5e-160 569.3 1289 34.0
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.8e-158 564.7 883 39.6
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.0e-156 558.9 1197 34.3
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.2e-152 545.4 1255 35.8
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 6.6e-140 503.1 1248 32.9
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.3e-135 488.8 1259 34.0
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 8.4e-127 459.5 682 45.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 3.8e-119 434.1 697 39.7
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.8e-116 425.2 1387 30.5
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 7.9e-109 399.8 1000 34.5
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.2e-95 355.1 568 39.8
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 4.5e-88 330.9 1189 27.9
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.4e-86 325.9 499 45.9
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 8.5e-79 300.1 742 34.9
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 9.4e-78 296.6 747 32.9
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.0e-68 265.0 1516 25.9
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 2.3e-60 238.8 1661 24.7
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.4e-57 228.8 297 43.4
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.2e-52 211.1 289 43.6
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 5.2e-52 211.1 159 61.6
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 6.8e-52 210.7 362 35.1
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.6e-51 208.8 990 28.0
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.3e-50 206.5 227 47.6
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.5e-38 166.4 803 28.6
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 5.8e-35 154.5 102 69.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 6.4e-34 151.0 1113 24.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.1e-33 148.3 206 41.3
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.5e-32 145.2 356 31.5
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 2.6e-27 129.0 260 34.6
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 8.1e-21 107.5 180 36.7
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.1e-20 105.5 77 61.0
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.2e-20 104.8 77 61.0
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 3.4e-19 102.1 97 51.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 1.7e-18 99.8 88 51.1
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 2.9e-18 99.0 169 36.7
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 4.9e-18 98.2 88 51.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 3.2e-17 95.5 74 56.8
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 3.0e-15 89.0 240 30.0
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.9e-14 86.3 245 31.8
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.6e-13 83.2 71 52.1
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 6.2e-13 81.3 97 40.2
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 3.1e-12 79.0 81 49.4
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 7.6e-11 74.3 176 31.8
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 9.9e-11 73.9 146 32.9
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.7e-10 73.2 52 59.6
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 5.4e-09 68.2 161 29.8
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 2.1e-08 66.2 115 27.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-08 65.9 63 49.2
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 7.8e-08 64.3 51 54.9
SEGI_23247 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 3.0e-07 62.4 181 27.1
VMungo1080G1168 Vigna mungo HOM05D002300 ORTHO05D002340 1.1e-06 60.5 72 37.5
Glyma.11G126400 Glycine max HOM05D002300 ORTHO05D002340 1.5e-06 60.1 73 35.6
Glyma.12G051000 Glycine max HOM05D002300 ORTHO05D002340 1.5e-06 60.1 73 35.6
Lj3g0017734 Lotus japonicus HOM05D002300 ORTHO05D002340 1.5e-06 60.1 177 25.4
CSS0020263 Camellia sinensis var. sinensis HOM05D002300 ORTHO05D002340 2.5e-06 59.3 76 35.5
CSS0049029 Camellia sinensis var. sinensis HOM05D002300 ORTHO05D002340 2.5e-06 59.3 76 35.5
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.5e-06 59.3 122 27.0
DCAR_017555 Daucus carota HOM05D002300 ORTHO05D002340 2.5e-06 59.3 110 30.9
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 2.5e-06 59.3 73 31.5
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.5e-06 59.3 44 59.1
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 5.6e-06 58.2 71 38.0
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 5.6e-06 58.2 71 38.0
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 5.6e-06 58.2 113 28.3
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 5.6e-06 58.2 122 26.2
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 5.6e-06 58.2 51 51.0
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 5.6e-06 58.2 95 30.5
Cc05_g09880 Coffea canephora HOM05D002300 ORTHO05D002340 7.3e-06 57.8 76 35.5
Lj6g0001194 Lotus japonicus HOM05D002300 ORTHO05D002340 7.3e-06 57.8 76 35.5
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 9.6e-06 57.4 113 29.2
Glyma.13G345300 Glycine max HOM05D002300 ORTHO05D002340 9.6e-06 57.4 156 27.6
PSO210G2410 Papaver somniferum HOM05D002300 ORTHO05D002340 9.6e-06 57.4 81 33.3
PSO210G4301 Papaver somniferum HOM05D002300 ORTHO05D002340 9.6e-06 57.4 81 33.3


User provided reference genes

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