Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 7.8e-104 380.9 266 100.0
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 4.6e-80 302.0 272 73.9
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.0e-79 300.8 269 83.3
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 7.1e-73 278.1 273 80.6
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 4.6e-72 275.4 279 79.9
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.0e-71 274.2 268 81.0
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 3.0e-71 272.7 269 78.1
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.0e-71 272.7 273 79.9
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 3.0e-71 272.7 271 77.9
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 3.9e-71 272.3 268 79.1
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 6.6e-71 271.6 285 78.2
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 6.6e-71 271.6 272 81.2
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 8.6e-71 271.2 268 80.6
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.3e-70 269.2 271 80.1
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 7.3e-70 268.1 266 80.8
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 8.1e-69 264.6 269 79.2
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 9.0e-68 261.2 283 76.0
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 4.4e-67 258.8 281 76.2
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 2.9e-66 256.1 278 71.6
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 6.4e-66 255.0 270 76.3
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.1e-65 254.2 268 79.1
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.4e-65 253.8 274 76.3
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.9e-65 253.4 268 75.7
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 4.2e-65 252.3 281 71.5
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 4.2e-65 252.3 283 73.9
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 4.2e-65 252.3 263 68.1
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.2e-64 250.8 282 71.6
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 1.2e-64 250.8 271 77.5
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.6e-64 250.4 278 75.5
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 2.1e-64 250.0 273 77.7
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 3.5e-64 249.2 241 83.8
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 3.5e-64 249.2 241 83.8
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 4.6e-64 248.8 283 74.6
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 6.0e-64 248.4 272 76.1
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.0e-63 247.7 284 73.9
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.5e-62 243.8 273 72.9
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 3.3e-62 242.7 221 88.2
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 4.3e-62 242.3 221 88.2
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 5.6e-62 241.9 279 70.3
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 5.6e-62 241.9 281 68.7
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 7.3e-62 241.5 277 70.4
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 9.6e-62 241.1 261 61.3
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.6e-61 240.4 281 64.8
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.8e-61 239.6 282 73.0
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 3.6e-61 239.2 277 71.5
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 4.8e-61 238.8 242 78.1
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 4.8e-61 238.8 248 78.2
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 6.2e-61 238.4 289 67.1
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 8.1e-61 238.0 268 74.6
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 1.8e-60 236.9 226 85.4
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 2.4e-60 236.5 282 72.7
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.4e-60 236.5 282 72.3
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 3.1e-60 236.1 282 72.3
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 6.9e-60 235.0 281 71.9
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.2e-59 234.2 283 72.1
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.5e-59 233.8 223 81.2
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 2.0e-59 233.4 269 74.3
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 2.6e-59 233.0 283 73.5
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 2.6e-59 233.0 282 72.3
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 2.6e-59 233.0 311 46.6
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.4e-59 232.6 279 72.0
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 4.5e-59 232.3 281 71.9
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.8e-59 231.9 294 69.0
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.8e-59 231.9 294 69.0
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 5.8e-59 231.9 277 72.9
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 7.6e-59 231.5 282 72.7
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.3e-58 230.7 216 75.9
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.2e-58 229.9 282 71.3
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 4.9e-58 228.8 283 71.7
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 2.4e-57 226.5 282 69.9
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.2e-57 226.1 270 61.5
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 3.2e-57 226.1 309 67.3
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 5.4e-57 225.3 266 74.1
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.6e-56 223.8 282 69.1
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 2.1e-56 223.4 292 58.2
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 6.0e-56 221.9 282 69.1
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.0e-55 221.1 242 78.1
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.0e-55 221.1 236 76.7
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.8e-55 220.3 196 86.7
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 6.7e-55 218.4 364 43.1
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 7.4e-54 214.9 196 88.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.8e-52 210.3 193 79.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.4e-52 209.9 254 53.5
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 5.5e-49 198.7 228 63.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 4.6e-48 195.7 182 85.2
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 5.1e-47 192.2 218 65.1
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 5.6e-46 188.7 212 75.0
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 2.1e-45 186.8 244 59.8
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 3.9e-39 166.0 86 89.5
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.1e-39 165.6 88 89.8
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.7e-39 165.2 218 51.4
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.1e-38 164.5 85 89.4
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.3e-37 161.0 85 89.4
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.2e-37 160.2 88 87.5
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.1e-36 156.4 88 85.2
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.1e-36 156.4 88 85.2
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 9.0e-36 154.8 235 45.5
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.6e-35 153.3 85 85.9
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 5.0e-34 149.1 193 56.0
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 6.5e-34 148.7 211 74.4
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.4e-28 131.0 201 73.6
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 6.9e-28 128.6 198 61.1
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.9e-25 120.6 120 58.3
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 8.8e-23 111.7 144 59.7
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 2.8e-21 106.7 118 52.5
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.8e-18 96.3 71 69.0
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 4.7e-16 89.4 60 76.7
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.5e-14 84.3 72 63.9
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 3.3e-14 83.2 45 88.9
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 2.2e-13 80.5 188 46.3
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.6e-11 74.3 44 75.0
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 5.5e-09 65.9 88 50.0
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.2e-08 64.7 54 61.1
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.6e-06 57.0 52 53.8


User provided reference genes

Program Settings