Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 0.0e+00 1430.2 711 100.0
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 0.0e+00 1080.9 709 76.2
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.1e-301 1039.6 712 74.7
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.8e-277 959.1 709 68.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.4e-263 911.8 721 65.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 4.1e-261 904.8 702 65.2
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.7e-259 899.4 696 65.2
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 6.6e-259 897.5 696 64.9
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.3e-256 889.0 672 67.1
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 7.5e-255 884.0 696 64.7
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 5.4e-253 877.9 687 64.5
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 4.6e-252 874.8 687 63.9
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.0e-251 872.1 679 66.0
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.6e-249 866.3 687 63.6
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.1e-249 865.9 700 63.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.1e-244 849.4 713 61.7
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.7e-243 846.3 682 61.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 6.6e-243 844.3 691 62.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.5e-242 842.4 667 63.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.2e-239 833.6 658 64.6
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.2e-239 833.6 686 63.4
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.3e-238 830.1 663 63.8
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.7e-238 829.7 694 62.2
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 4.9e-238 828.2 704 62.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 5.4e-237 824.7 682 62.6
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 3.5e-236 822.0 669 62.2
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.0e-235 820.5 698 60.2
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.7e-235 819.7 687 60.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.3e-235 819.3 658 62.3
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.0e-235 818.9 686 61.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 8.7e-235 817.4 686 61.8
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 9.6e-234 813.9 681 61.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.1e-233 812.8 686 60.8
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.8e-233 812.4 684 62.6
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.6e-233 812.0 686 60.8
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.6e-233 812.0 662 62.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 4.8e-233 811.6 687 60.1
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.4e-232 809.3 666 61.3
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.0e-232 808.5 664 61.7
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 5.3e-232 808.1 678 60.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 6.9e-232 807.7 692 60.8
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 6.9e-232 807.7 721 59.4
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.2e-231 807.0 707 60.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.5e-231 806.6 662 62.2
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 5.8e-231 804.7 692 60.8
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 7.6e-231 804.3 694 60.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.9e-231 803.9 669 61.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.3e-230 803.5 663 60.9
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.7e-230 803.1 660 61.7
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.7e-230 803.1 701 58.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.2e-230 802.7 683 59.4
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 5.4e-229 798.1 661 61.6
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 9.3e-229 797.3 665 62.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 9.3e-229 797.3 698 58.6
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.2e-228 797.0 698 58.9
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 2.1e-228 796.2 706 57.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 7.9e-228 794.3 689 59.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.0e-227 793.9 661 61.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 3.0e-227 792.3 687 59.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 3.0e-227 792.3 687 59.2
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 6.6e-227 791.2 664 60.5
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.5e-226 789.3 671 59.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.6e-225 786.6 680 59.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 4.8e-225 785.0 685 59.0
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 4.8e-225 785.0 701 57.1
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 8.1e-225 784.3 658 60.9
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.4e-224 783.5 707 58.1
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.5e-223 780.0 698 58.3
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.0e-223 779.6 721 56.6
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.0e-223 779.6 721 56.6
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 9.9e-223 777.3 687 59.7
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.2e-222 776.2 676 58.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.2e-222 776.2 663 59.7
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.4e-221 773.5 685 58.1
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.9e-221 773.1 658 59.9
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.2e-221 772.3 679 59.8
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 4.6e-220 768.5 658 59.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 7.9e-220 767.7 691 58.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.0e-219 767.3 671 59.6
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 2.3e-219 766.1 639 60.7
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.9e-219 765.4 679 59.4
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.1e-218 763.8 729 55.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 7.4e-218 761.1 685 58.0
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.8e-217 759.2 679 59.2
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.7e-217 758.8 670 58.2
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 4.8e-217 758.4 697 56.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 6.2e-217 758.1 702 57.7
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.4e-216 756.1 702 57.5
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-215 753.4 669 57.5
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-214 750.7 695 57.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-213 746.9 716 55.2
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 6.0e-212 741.5 698 56.0
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 5.1e-211 738.4 692 55.8
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.5e-210 736.1 730 54.9
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 5.3e-208 728.4 705 54.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.6e-207 726.1 667 57.4
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.0e-206 724.2 695 55.1
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 9.0e-200 701.0 700 54.1
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-199 700.7 560 63.6
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.8e-198 695.7 590 61.4
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.6e-196 690.3 687 53.1
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 7.9e-196 688.0 600 60.5
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 2.5e-189 666.4 688 51.9
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 3.9e-187 659.1 538 63.4
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 3.9e-187 659.1 697 49.4
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 6.7e-187 658.3 655 52.1
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.1e-180 636.7 680 51.9
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.1e-176 622.5 689 49.6
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 4.1e-168 595.9 715 46.2
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.6e-167 594.0 427 69.3
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.2e-166 590.1 611 50.4
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.8e-163 578.2 507 59.6
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 3.6e-156 556.2 720 45.8
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 5.2e-155 552.4 628 46.7
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.9e-153 546.6 727 44.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.9e-153 545.8 410 66.8
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 5.9e-151 538.9 721 44.7
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 4.1e-144 516.2 549 48.8
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-140 504.2 454 57.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 3.1e-131 473.4 450 55.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.1e-123 446.8 401 58.4
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.6e-111 406.4 471 48.8
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 2.3e-110 404.1 675 36.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 3.8e-97 360.1 448 45.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.1e-91 342.0 287 62.0
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.6e-84 318.2 235 68.5
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.8e-83 314.7 423 45.4
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.6e-77 294.3 255 56.9
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-71 275.0 187 70.1
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 6.1e-71 273.1 233 62.7
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 6.3e-68 263.1 199 65.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.0e-66 258.1 268 53.7
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.4e-61 240.4 176 67.6
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 4.4e-61 240.4 243 53.9
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 8.8e-54 216.1 202 53.5
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.0e-49 200.3 136 70.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.6e-47 195.3 136 66.9
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.6e-47 194.1 220 50.9
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.4e-43 182.2 134 67.9
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.1e-43 180.6 169 52.7
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.6e-39 168.7 317 37.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 8.0e-39 166.4 115 65.2
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.0e-33 149.4 506 27.7
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 8.3e-28 129.8 231 39.0
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.6e-26 125.6 80 72.5
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 6.6e-17 93.6 574 22.8
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 8.1e-15 86.7 93 47.3
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-10 72.0 51 68.6
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 4.3e-08 64.3 71 43.7
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.8e-06 58.9 47 53.2


User provided reference genes

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