Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4125 Salvia bowleyana HOM05D004317 ORTHO05D005031 9.0e-173 610.1 306 100.0
MSTRG.2526 Avicennia marina HOM05D004317 ORTHO05D005031 3.3e-143 511.9 337 77.4
Migut.H02443 Erythranthe guttata HOM05D004317 ORTHO05D005031 5.2e-136 488.0 338 74.6
Oeu028366.1 Olea europaea HOM05D004317 ORTHO05D005031 2.6e-135 485.7 337 73.6
Peaxi162Scf00106g01615 Petunia axillaris HOM05D004317 ORTHO05D005031 7.5e-135 484.2 339 72.9
Dinv19475 Davidia involucrata HOM05D004317 ORTHO05D005031 2.2e-134 482.6 337 72.1
Nitab4.5_0004977g0020 Nicotiana tabacum HOM05D004317 ORTHO05D005031 6.3e-134 481.1 339 73.7
Nitab4.5_0000184g0250 Nicotiana tabacum HOM05D004317 ORTHO05D005031 2.4e-133 479.2 339 73.5
Solyc04g051700.3 Solanum lycopersicum HOM05D004317 ORTHO05D005031 1.7e-131 473.0 339 72.9
TAR625G1069 Trochodendron aralioides HOM05D004317 ORTHO05D005031 2.9e-131 472.2 338 72.2
Dinv42682 Davidia involucrata HOM05D004317 ORTHO05D005031 3.8e-131 471.9 337 70.9
PGSC0003DMG402031196 Solanum tuberosum HOM05D004317 ORTHO05D005031 3.8e-131 471.9 339 72.3
Rhsim10G0148900 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.5e-130 469.9 338 71.9
CAN.G241.17 Capsicum annuum HOM05D004317 ORTHO05D005031 7.2e-130 467.6 339 71.7
Peaxi162Scf00270g00910 Petunia axillaris HOM05D004317 ORTHO05D005031 7.2e-130 467.6 339 70.5
Sopen04g023080 Solanum pennellii HOM05D004317 ORTHO05D005031 3.6e-129 465.3 339 72.3
Hma1.2p1_0375F.1_g138790 Hydrangea macrophylla HOM05D004317 ORTHO05D005031 3.0e-128 462.2 339 70.8
Potri.005G085100 Populus trichocarpa HOM05D004317 ORTHO05D005031 2.0e-127 459.5 339 69.9
Duzib147G1288 Durio zibethinus HOM05D004317 ORTHO05D005031 3.4e-127 458.8 339 70.5
Oeu015853.1 Olea europaea HOM05D004317 ORTHO05D005031 3.4e-127 458.8 337 70.0
Thecc.01G114600 Theobroma cacao HOM05D004317 ORTHO05D005031 7.5e-127 457.6 339 69.9
Cc11_g00180 Coffea canephora HOM05D004317 ORTHO05D005031 9.8e-127 457.2 352 66.8
PSO170G2871 Papaver somniferum HOM05D004317 ORTHO05D005031 1.3e-126 456.8 339 69.0
Sabra05G0069900 Salix brachista HOM05D004317 ORTHO05D005031 1.3e-126 456.8 349 68.8
CANSAT01G1092 Cannabis sativa HOM05D004317 ORTHO05D005031 1.7e-126 456.4 339 69.6
Cfa002764 Carpinus fangiana HOM05D004317 ORTHO05D005031 1.7e-126 456.4 340 69.7
vmacro18639 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 8.3e-126 454.1 337 70.0
GSVIVG01022244001 Vitis vinifera HOM05D004317 ORTHO05D005031 8.3e-126 454.1 339 68.7
MD08G1250200 Malus domestica HOM05D004317 ORTHO05D005031 1.1e-125 453.8 341 69.5
Cpa.g.sc191.9 Carica papaya HOM05D004317 ORTHO05D005031 1.8e-125 453.0 339 68.7
COL.COLO4_10999 Corchorus olitorius HOM05D004317 ORTHO05D005031 1.8e-125 453.0 340 70.3
MD15G1445400 Malus domestica HOM05D004317 ORTHO05D005031 1.8e-125 453.0 339 69.3
Duzib264G0693 Durio zibethinus HOM05D004317 ORTHO05D005031 2.4e-125 452.6 341 69.8
RcHm_v2.0_Chr2g0117121 Rosa chinensis HOM05D004317 ORTHO05D005031 2.4e-125 452.6 341 71.3
Atru.chr4.2810 Acer truncatum HOM05D004317 ORTHO05D005031 3.1e-125 452.2 340 70.3
CiPaw.04G091000 Carya illinoinensis HOM05D004317 ORTHO05D005031 4.1e-125 451.8 339 69.6
MSTRG.23310 Avicennia marina HOM05D004317 ORTHO05D005031 2.7e-124 449.1 337 68.5
FvH4_1g22810 Fragaria vesca HOM05D004317 ORTHO05D005031 2.7e-124 449.1 341 68.6
FAN19G1483 Fragaria x ananassa HOM05D004317 ORTHO05D005031 3.5e-124 448.7 341 68.6
Lsat_1_v5_gn_6_7740 Lactuca sativa HOM05D004317 ORTHO05D005031 5.9e-124 448.0 336 67.0
QL06p031876 Quercus lobata HOM05D004317 ORTHO05D005031 5.9e-124 448.0 339 69.6
FAN28G2916 Fragaria x ananassa HOM05D004317 ORTHO05D005031 1.0e-123 447.2 341 68.6
FAN26G1550 Fragaria x ananassa HOM05D004317 ORTHO05D005031 1.3e-123 446.8 341 68.6
vmacro12895 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 2.3e-123 446.0 390 62.1
Ciclev10026038m.g Citrus clementina HOM05D004317 ORTHO05D005031 3.8e-123 445.3 339 69.0
Haze_25055 Corylus avellana HOM05D004317 ORTHO05D005031 5.0e-123 444.9 364 65.7
Aqoxy6G00452 Aquilegia oxysepala HOM05D004317 ORTHO05D005031 1.1e-122 443.7 338 68.6
PSO210G1492 Papaver somniferum HOM05D004317 ORTHO05D005031 1.1e-122 443.7 339 67.8
TPR.G2235 Trifolium pratense HOM05D004317 ORTHO05D005031 2.5e-122 442.6 338 69.8
FAN23G2660 Fragaria x ananassa HOM05D004317 ORTHO05D005031 3.3e-122 442.2 342 68.7
Ca_17692_v3 Cicer arietinum L. HOM05D004317 ORTHO05D005031 5.6e-122 441.4 338 69.5
DCAR_000764 Daucus carota HOM05D004317 ORTHO05D005031 9.5e-122 440.7 340 69.7
Lj4A864T19 Lonicera japonica HOM05D004317 ORTHO05D005031 1.2e-121 440.3 345 67.8
PGR102G1870 Punica granatum HOM05D004317 ORTHO05D005031 2.8e-121 439.1 340 68.2
Gorai.007G062600 Gossypium raimondii HOM05D004317 ORTHO05D005031 4.7e-121 438.3 334 68.9
VMungo0251G1621 Vigna mungo HOM05D004317 ORTHO05D005031 1.4e-120 436.8 339 67.8
Gohir.D11G057400 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.8e-120 436.4 334 68.6
Gohir.D11G232000 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.8e-120 436.4 339 67.6
Psat7g050920 Pisum sativum HOM05D004317 ORTHO05D005031 1.8e-120 436.4 342 68.7
CARHR278810 Cardamine hirsuta HOM05D004317 ORTHO05D005031 2.3e-120 436.0 345 68.4
Gorai.007G245100 Gossypium raimondii HOM05D004317 ORTHO05D005031 2.3e-120 436.0 339 67.8
Carub.0008s2563 Capsella rubella HOM05D004317 ORTHO05D005031 4.0e-120 435.3 343 69.7
Medtr8g091980 Medicago truncatula HOM05D004317 ORTHO05D005031 4.0e-120 435.3 347 68.3
Nn1g05158 Nelumbo nucifera HOM05D004317 ORTHO05D005031 4.0e-120 435.3 340 67.6
Duzib187G1335 Durio zibethinus HOM05D004317 ORTHO05D005031 5.2e-120 434.9 340 66.8
Gohir.A11G053900 Gossypium hirsutum HOM05D004317 ORTHO05D005031 8.9e-120 434.1 334 68.6
CsaV3_2G017700 Cucumis sativus L. HOM05D004317 ORTHO05D005031 1.5e-119 433.3 339 66.7
Sp2g27880 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.5e-119 433.3 342 68.4
ClCG02G000980 Citrullus lanatus HOM05D004317 ORTHO05D005031 3.4e-119 432.2 339 66.7
MELO3C020962.2 Cucumis melo HOM05D004317 ORTHO05D005031 3.4e-119 432.2 339 66.4
AT5G64813 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 5.8e-119 431.4 346 68.2
Phvul.002G265300 Phaseolus vulgaris HOM05D004317 ORTHO05D005031 5.8e-119 431.4 339 67.6
AL8G42280 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 1.3e-118 430.3 344 68.6
Thhalv10004519m.g Eutrema salsugineum HOM05D004317 ORTHO05D005031 2.2e-118 429.5 346 68.5
Glyma.05G184400 Glycine max HOM05D004317 ORTHO05D005031 3.7e-118 428.7 339 68.1
THA.LOC104799321 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 3.7e-118 428.7 342 66.7
Aa31LG1G17120 Aethionema arabicum HOM05D004317 ORTHO05D005031 4.9e-118 428.3 339 67.0
HanXRQChr02g0047931 Helianthus annuus HOM05D004317 ORTHO05D005031 4.9e-118 428.3 339 64.3
Rhsim08G0005500 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.1e-117 427.2 337 66.2
BcaC01g02714 Brassica carinata HOM05D004317 ORTHO05D005031 1.9e-117 426.4 342 68.1
C03p61360 Brassica napus HOM05D004317 ORTHO05D005031 1.9e-117 426.4 342 68.1
Lj4g0017689 Lotus japonicus HOM05D004317 ORTHO05D005031 3.2e-117 425.6 342 67.5
BcaB04g19996 Brassica carinata HOM05D004317 ORTHO05D005031 5.4e-117 424.9 342 67.8
Sed0006410 Sechium edule HOM05D004317 ORTHO05D005031 5.4e-117 424.9 339 65.8
A06p31600 Brassica napus HOM05D004317 ORTHO05D005031 7.0e-117 424.5 342 67.5
Glyma.08G142300 Glycine max HOM05D004317 ORTHO05D005031 7.0e-117 424.5 339 68.1
arahy.Tifrunner.gnm1.ann1.N9CCL6 Arachis hypogaea HOM05D004317 ORTHO05D005031 9.2e-117 424.1 357 64.1
THA.LOC104819313 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 9.2e-117 424.1 343 66.8
BcaB02g09831 Brassica carinata HOM05D004317 ORTHO05D005031 1.6e-116 423.3 343 67.6
Lalb_Chr12g0203501 Lupinus albus HOM05D004317 ORTHO05D005031 6.0e-116 421.4 339 66.7
HanXRQChr03g0078021 Helianthus annuus HOM05D004317 ORTHO05D005031 7.8e-116 421.0 339 65.8
Sc07g0001570 Simmondsia chinensis HOM05D004317 ORTHO05D005031 1.3e-115 420.2 338 65.4
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 3.0e-115 419.1 355 63.7
EL10Ac6g14771 Beta vulgaris HOM05D004317 ORTHO05D005031 3.0e-115 419.1 338 63.9
AUR62027164 Chenopodium quinoa HOM05D004317 ORTHO05D005031 3.0e-115 419.1 339 64.9
Eucgr.H04871 Eucalyptus grandis HOM05D004317 ORTHO05D005031 6.6e-115 417.9 339 63.7
Ah.02g125940 Amaranthus hybridus HOM05D004317 ORTHO05D005031 7.3e-114 414.5 339 63.1
GSVIVG01013682001 Vitis vinifera HOM05D004317 ORTHO05D005031 1.6e-113 413.3 338 64.8
MBI01_g44371_MAGBIO Magnolia biondii HOM05D004317 ORTHO05D005031 2.8e-113 412.5 360 62.5
A09p08860 Brassica napus HOM05D004317 ORTHO05D005031 3.6e-113 412.1 344 66.9
CiPaw.03G133600 Carya illinoinensis HOM05D004317 ORTHO05D005031 3.6e-113 412.1 318 67.6
ECA240G0243 Erigeron canadensis HOM05D004317 ORTHO05D005031 3.6e-113 412.1 337 63.5
BolC3t18396H Brassica oleracea HOM05D004317 ORTHO05D005031 6.2e-113 411.4 370 63.0
C09p10280 Brassica napus HOM05D004317 ORTHO05D005031 8.0e-113 411.0 344 66.9
BolC9t53928H Brassica oleracea HOM05D004317 ORTHO05D005031 8.0e-113 411.0 344 66.9
Lalb_Chr13g0296231 Lupinus albus HOM05D004317 ORTHO05D005031 8.0e-113 411.0 338 65.1
BraA09t36537Z Brassica rapa HOM05D004317 ORTHO05D005031 1.4e-112 410.2 344 66.9
BcaC04g23277 Brassica carinata HOM05D004317 ORTHO05D005031 2.3e-112 409.5 344 66.9
Potri.007G080100 Populus trichocarpa HOM05D004317 ORTHO05D005031 5.2e-112 408.3 307 68.7
Lj2C567G4 Lonicera japonica HOM05D004317 ORTHO05D005031 8.9e-112 407.5 408 56.1
Sabra07G0067200 Salix brachista HOM05D004317 ORTHO05D005031 8.9e-112 407.5 410 55.9
Nn5g28875 Nelumbo nucifera HOM05D004317 ORTHO05D005031 1.5e-111 406.8 306 68.6
Sc03g0004440 Simmondsia chinensis HOM05D004317 ORTHO05D005031 1.5e-111 406.8 339 63.4
BraA06t26097Z Brassica rapa HOM05D004317 ORTHO05D005031 2.0e-111 406.4 378 61.1
CDE05G1892 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 7.5e-111 404.4 337 62.0
Hund03530 Selenicereus undatus HOM05D004317 ORTHO05D005031 1.3e-110 403.7 337 63.5
Sed0024973 Sechium edule HOM05D004317 ORTHO05D005031 2.2e-110 402.9 336 64.0
TWI79G1778 Tripterygium wilfordii HOM05D004317 ORTHO05D005031 2.9e-110 402.5 308 68.5
TAR381G0083 Trochodendron aralioides HOM05D004317 ORTHO05D005031 6.4e-110 401.4 342 65.2
arahy.Tifrunner.gnm1.ann1.8U6WSJ Arachis hypogaea HOM05D004317 ORTHO05D005031 1.1e-109 400.6 334 65.0
Gohir.A11G197500 Gossypium hirsutum HOM05D004317 ORTHO05D005031 7.0e-109 397.9 339 63.7
unitig_0.g479 Utricularia gibba HOM05D004317 ORTHO05D005031 3.5e-108 395.6 342 63.2
arahy.Tifrunner.gnm1.ann1.QW6G0A Arachis hypogaea HOM05D004317 ORTHO05D005031 3.9e-107 392.1 336 64.3
Sp6g33500 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.9e-106 389.8 341 64.2
Ah.05g168370 Amaranthus hybridus HOM05D004317 ORTHO05D005031 2.5e-106 389.4 337 59.9
AUR62034924 Chenopodium quinoa HOM05D004317 ORTHO05D005031 3.6e-105 385.6 346 59.2
Rhsim07G0116100 Rhododendron simsii HOM05D004317 ORTHO05D005031 6.2e-105 384.8 355 58.6
AL6G20330 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 8.1e-105 384.4 341 63.6
Os10g0135200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 3.4e-103 379.0 325 60.6
Lalb_Chr11g0068101 Lupinus albus HOM05D004317 ORTHO05D005031 1.3e-102 377.1 334 60.8
AT5G09910 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 1.7e-102 376.7 342 63.2
ATR1120G075 Amborella trichopoda HOM05D004317 ORTHO05D005031 3.2e-101 372.5 308 61.0
Zm00001eb224280 Zea mays HOM05D004317 ORTHO05D005031 3.2e-101 372.5 326 58.6
Carub.0006s0835 Capsella rubella HOM05D004317 ORTHO05D005031 4.1e-101 372.1 336 62.2
EL10Ac1g01634 Beta vulgaris HOM05D004317 ORTHO05D005031 5.4e-101 371.7 390 53.1
Manes.12G143400 Manihot esculenta HOM05D004317 ORTHO05D005031 4.6e-100 368.6 274 69.7
DCAR_001376 Daucus carota HOM05D004317 ORTHO05D005031 7.8e-100 367.9 331 64.4
Zm00001eb398890 Zea mays HOM05D004317 ORTHO05D005031 4.7e-97 358.6 337 55.2
SGA_v2.0_scaffold2G01290 Striga asiatica HOM05D004317 ORTHO05D005031 3.8e-94 349.0 373 53.4
PSO541G5773 Papaver somniferum HOM05D004317 ORTHO05D005031 2.1e-92 343.2 334 57.2
Os03g0242200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 3.5e-92 342.4 325 54.5
AUR62003298 Chenopodium quinoa HOM05D004317 ORTHO05D005031 3.0e-91 339.3 277 65.3
Prupe.1G587300 Prunus persica HOM05D004317 ORTHO05D005031 4.4e-87 325.5 309 61.5
HPP92_009117 Vanilla planifolia HOM05D004317 ORTHO05D005031 1.4e-85 320.5 287 58.5
PSO675G4086 Papaver somniferum HOM05D004317 ORTHO05D005031 6.2e-81 305.1 278 59.7
HPP92_021785 Vanilla planifolia HOM05D004317 ORTHO05D005031 1.6e-73 280.4 254 59.8
AUR62026610 Chenopodium quinoa HOM05D004317 ORTHO05D005031 4.9e-62 242.3 197 61.9
Mapoly0088s0081 Marchantia polymorpha HOM05D004317 ORTHO05D005031 1.0e-59 234.6 339 42.8
ECA233G0885 Erigeron canadensis HOM05D004317 ORTHO05D005031 1.3e-57 227.6 157 70.1
CDE11G1235 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 4.2e-53 212.6 170 61.2
SMO364G0333 Selaginella moellendorffii HOM05D004317 ORTHO05D005031 2.5e-50 203.4 218 52.3
CARHR203430 Cardamine hirsuta HOM05D004317 ORTHO05D005031 5.0e-46 189.1 154 61.7
Oeu031971.2 Olea europaea HOM05D004317 ORTHO05D005031 2.1e-44 183.7 258 47.7
SalBow5G1590 Salvia bowleyana HOM05D004317 ORTHO05D005031 5.7e-42 175.6 110 76.4
SEGI_23806 Sequoiadendron giganteum HOM05D004317 ORTHO05D005031 3.1e-32 143.3 116 65.5
CDE11G1206 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 1.6e-23 114.4 108 58.3
Actinidia33578 Actinidia chinensis HOM05D004317 ORTHO05D005031 7.7e-23 112.1 87 70.1
Nn3g19889 Nelumbo nucifera HOM05D004317 ORTHO05D005031 3.2e-21 106.7 70 74.3
TAR628G1042 Trochodendron aralioides HOM05D004317 ORTHO05D005031 7.2e-21 105.5 67 73.1
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.0e-19 101.7 83 61.4
CBR_g23133 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-18 98.2 112 45.5
CARHR203420 Cardamine hirsuta HOM05D004317 ORTHO05D005031 7.0e-16 89.0 117 50.4
MCO10G219 Micromonas commoda HOM05D004317 ORTHO05D005031 2.4e-08 63.9 101 35.6
Glyma.17G174700 Glycine max HOM05D004317 ORTHO05D005031 4.6e-07 59.7 67 50.7
Potri.007G079900 Populus trichocarpa HOM05D000382 ORTHO05D000391 1.0e-06 58.5 34 82.4


User provided reference genes

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