Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.0e-137 493.4 249 100.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 5.2e-86 321.6 246 68.3
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 3.2e-83 312.4 243 67.1
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 9.2e-83 310.8 246 65.4
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.7e-82 309.3 249 63.9
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 4.6e-82 308.5 246 66.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 7.8e-82 307.8 248 64.9
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.3e-81 306.2 245 64.9
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 8.6e-81 304.3 251 63.3
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.1e-80 303.9 251 65.7
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.5e-80 303.5 251 63.3
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.9e-80 303.1 249 63.5
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 4.3e-80 302.0 248 64.1
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 9.5e-80 300.8 248 63.3
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 2.8e-79 299.3 250 64.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 6.2e-79 298.1 249 62.2
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.8e-78 296.6 238 61.8
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 2.4e-78 296.2 242 63.6
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.1e-78 295.8 249 61.4
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 6.8e-78 294.7 249 61.8
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 6.8e-78 294.7 246 63.8
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.5e-77 293.5 248 60.5
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 9.9e-77 290.8 236 65.3
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.7e-76 290.0 241 61.0
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 3.8e-76 288.9 250 60.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 3.2e-75 285.8 249 59.0
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 5.4e-75 285.0 247 59.5
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 9.2e-75 284.3 246 61.8
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 3.5e-74 282.3 247 59.9
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 7.8e-74 281.2 244 59.4
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.0e-73 280.8 249 58.6
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.3e-73 279.6 247 59.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 3.0e-73 279.3 247 59.5
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 3.0e-73 279.3 247 59.5
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.0e-73 279.3 247 58.7
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 3.9e-73 278.9 253 59.3
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.9e-72 276.6 248 58.9
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.5e-72 276.2 249 58.6
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.5e-72 276.2 246 61.8
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.5e-72 276.2 234 64.1
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 2.5e-72 276.2 239 56.9
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 3.3e-72 275.8 236 62.3
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 7.3e-72 274.6 249 57.8
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 9.6e-72 274.2 249 59.4
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 9.6e-72 274.2 252 58.3
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 9.6e-72 274.2 247 59.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.2e-71 273.9 249 58.2
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 2.8e-71 272.7 249 58.2
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 3.6e-71 272.3 252 58.3
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.4e-70 270.4 247 58.3
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.8e-70 270.0 251 57.4
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.8e-70 270.0 247 58.3
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.8e-70 270.0 249 58.2
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.4e-70 269.6 251 58.6
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 4.0e-70 268.9 249 58.6
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 6.9e-70 268.1 249 57.4
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 6.9e-70 268.1 254 57.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 9.0e-70 267.7 249 59.4
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 9.0e-70 267.7 249 57.4
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.5e-69 266.9 249 58.2
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.5e-69 266.9 249 58.2
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.5e-69 266.9 246 57.3
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 2.0e-69 266.5 246 56.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 4.4e-69 265.4 253 57.7
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 5.8e-69 265.0 246 57.7
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 5.8e-69 265.0 249 57.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 9.9e-69 264.2 246 56.1
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 9.9e-69 264.2 256 55.1
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.7e-68 263.5 246 57.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 6.4e-68 261.5 249 55.0
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 8.4e-68 261.2 246 57.3
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.1e-67 260.8 253 55.3
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.1e-67 260.8 250 57.6
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.4e-67 259.6 218 58.7
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 2.4e-67 259.6 246 56.5
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 2.4e-67 259.6 238 57.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 3.2e-67 259.2 256 54.7
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 4.2e-67 258.8 250 56.8
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 4.2e-67 258.8 255 53.7
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 5.4e-67 258.5 256 54.7
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 5.4e-67 258.5 256 54.7
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 5.4e-67 258.5 256 54.7
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 5.4e-67 258.5 256 54.7
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 7.1e-67 258.1 246 55.3
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.2e-66 257.3 253 54.2
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.6e-66 256.9 256 53.9
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.7e-66 256.1 219 58.9
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 2.7e-66 256.1 217 57.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 2.7e-66 256.1 256 54.3
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 3.5e-66 255.8 236 55.5
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 7.8e-66 254.6 256 53.9
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 7.8e-66 254.6 238 55.9
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.0e-65 254.2 249 53.8
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.3e-65 253.8 248 53.2
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 3.9e-65 252.3 246 54.9
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 5.1e-65 251.9 250 54.4
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 8.7e-65 251.1 254 53.1
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.5e-64 250.4 250 53.6
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.9e-64 250.0 247 54.3
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 1.9e-64 250.0 242 54.5
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 3.3e-64 249.2 246 56.5
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 5.6e-64 248.4 249 54.6
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 7.3e-64 248.1 233 55.8
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 3.6e-63 245.7 225 54.2
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 6.2e-63 245.0 252 54.0
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.4e-62 243.8 208 59.6
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.8e-62 243.4 248 53.6
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 3.1e-62 242.7 255 52.5
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 5.3e-62 241.9 208 56.7
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 5.8e-61 238.4 214 58.4
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 7.6e-61 238.0 255 52.5
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 7.6e-61 238.0 255 53.3
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 1.3e-60 237.3 206 56.8
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.3e-60 237.3 253 50.2
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 2.2e-60 236.5 255 51.0
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 3.8e-60 235.7 249 50.2
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 7.9e-58 228.0 248 49.6
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 1.3e-57 227.3 252 52.8
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.5e-56 223.0 143 73.4
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.3e-56 222.6 141 73.8
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 9.6e-56 221.1 288 46.5
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 9.6e-56 221.1 288 46.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.4e-53 212.6 141 70.9
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 2.3e-49 199.9 216 54.6
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 5.1e-49 198.7 228 48.7
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 5.6e-48 195.3 138 65.9
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.2e-45 187.6 143 64.3
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.0e-44 184.5 173 59.0
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 5.5e-43 178.7 246 39.8
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.2e-42 177.6 257 38.5
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.6e-42 175.6 192 49.0
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.6e-42 175.6 126 65.1
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 3.0e-41 172.9 197 44.2
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 6.7e-41 171.8 145 54.5
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.8e-38 163.7 244 44.7
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.4e-38 163.3 172 54.1
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 2.9e-36 156.4 106 67.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 3.9e-33 146.0 239 36.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 4.3e-32 142.5 182 37.9
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 2.2e-31 140.2 200 37.0
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 6.3e-31 138.7 202 36.1
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.8e-30 137.1 152 49.3
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 1.4e-27 127.5 186 34.9
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.3e-23 114.4 225 32.0
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.2e-23 113.6 75 66.7
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.0e-21 107.1 76 65.8
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.9e-19 100.5 124 51.6
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 3.9e-17 92.8 71 60.6
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.5e-16 90.9 179 31.8
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.3e-15 85.5 41 95.1
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 8.2e-15 85.1 56 66.1
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.2e-13 81.3 55 63.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.6e-13 80.9 60 58.3
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.6e-13 80.9 49 71.4
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 5.9e-13 79.0 54 63.0
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 5.9e-13 79.0 46 76.1
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.1e-10 70.5 67 56.7
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 5.2e-09 65.9 56 53.6
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.2e-07 60.5 72 51.4
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.8e-07 60.1 44 61.4
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 7.0e-06 55.5 38 65.8
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 7.0e-06 55.5 33 69.7


User provided reference genes

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