Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.7e-293 1011.9 511 100.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 9.8e-289 996.1 533 95.7
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 5.6e-236 820.8 462 87.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.6e-233 812.0 524 79.0
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-232 809.3 467 84.8
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.8e-232 808.1 524 78.8
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-231 806.6 460 84.8
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-231 806.6 516 78.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.2e-231 805.1 465 83.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.6e-230 802.7 486 81.5
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.7e-230 802.0 546 76.4
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 3.5e-230 801.6 543 76.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 4.6e-230 801.2 523 77.2
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.6e-230 801.2 523 78.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.6e-230 801.2 461 83.9
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.0e-229 800.0 465 83.9
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.8e-229 799.3 468 82.9
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.9e-229 798.1 461 83.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.1e-229 797.7 461 82.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 5.1e-229 797.7 468 84.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 8.7e-229 797.0 522 76.8
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.5e-228 796.2 532 75.6
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.3e-228 795.0 496 80.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.3e-228 794.7 501 77.8
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.6e-228 794.3 496 80.0
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.3e-227 793.1 493 79.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.1e-227 792.3 518 77.0
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.8e-227 792.0 461 83.1
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.8e-227 792.0 463 82.7
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.8e-227 791.2 485 80.8
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.2e-227 790.8 496 79.6
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 8.1e-227 790.4 462 82.9
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.1e-226 790.0 485 81.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.4e-226 789.6 464 82.5
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.4e-226 789.6 519 75.9
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.4e-226 789.6 534 75.8
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.8e-226 789.3 473 80.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.4e-226 788.9 488 79.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.4e-226 788.9 513 78.4
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 4.0e-226 788.1 463 82.9
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.0e-226 788.1 475 81.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 5.3e-226 787.7 463 82.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.9e-226 787.3 521 75.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 6.9e-226 787.3 520 75.8
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.2e-225 786.6 508 76.8
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 7.6e-225 783.9 466 82.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.3e-224 783.1 461 82.6
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 6.5e-224 780.8 499 77.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 8.4e-224 780.4 463 81.9
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.4e-223 779.6 514 75.9
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.2e-223 778.5 470 79.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 5.5e-223 777.7 522 75.9
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.5e-223 777.7 521 75.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 5.5e-223 777.7 459 82.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.1e-223 777.3 500 76.8
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.1e-223 777.3 463 82.1
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.3e-223 776.9 512 75.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.2e-222 776.5 486 79.4
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.6e-222 776.2 509 76.2
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.5e-222 775.0 512 75.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 7.9e-222 773.9 505 76.6
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.3e-221 773.1 468 80.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.3e-221 772.3 469 79.7
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.0e-221 771.9 503 75.5
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.7e-221 770.4 490 78.0
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.5e-220 769.6 491 77.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-220 769.2 466 80.7
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-220 767.7 554 70.9
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 9.6e-220 766.9 460 80.2
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.3e-219 766.5 506 75.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-219 766.5 463 80.8
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.1e-219 765.8 499 76.4
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.1e-219 765.8 457 82.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 8.2e-219 763.8 462 80.1
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 8.2e-219 763.8 459 81.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.4e-218 763.1 479 78.3
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-218 762.3 462 78.8
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.4e-218 762.3 507 73.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-217 759.6 462 78.4
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.0e-217 759.2 462 78.4
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.5e-217 758.1 511 72.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 7.6e-217 757.3 510 72.7
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 7.6e-217 757.3 462 77.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.3e-216 756.5 504 73.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.2e-216 755.7 507 73.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.2e-216 755.7 462 81.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.9e-216 755.4 474 76.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.8e-216 755.0 538 71.7
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 5.0e-216 754.6 510 72.9
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 8.5e-216 753.8 499 74.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.1e-215 753.4 492 74.4
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.5e-215 752.3 503 73.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.5e-215 752.3 557 69.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 3.2e-215 751.9 462 78.8
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 7.2e-215 750.7 462 77.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.1e-214 749.2 507 72.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.8e-213 746.1 463 77.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 5.1e-213 744.6 527 71.0
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.3e-212 741.5 486 74.9
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.8e-210 736.1 459 77.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.6e-206 721.8 418 85.2
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 5.7e-204 714.5 511 70.6
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.3e-203 713.4 522 70.9
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.8e-203 711.4 525 70.7
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.4e-202 709.1 467 72.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 4.5e-201 704.9 470 72.6
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 9.4e-199 697.2 457 73.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 7.9e-198 694.1 412 80.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.9e-197 691.8 472 71.0
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.1e-194 682.2 458 70.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.2e-193 680.2 461 73.1
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 3.5e-193 678.7 456 73.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.0e-192 674.9 428 80.6
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.5e-191 673.3 448 78.3
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.6e-190 669.8 378 87.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.3e-188 662.1 430 74.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 3.7e-187 658.7 471 71.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.0e-184 650.6 373 83.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.0e-181 639.0 373 82.8
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 5.7e-180 634.8 509 64.4
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 8.3e-179 630.9 712 50.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-178 630.2 480 67.7
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.5e-175 620.2 453 65.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.9e-175 619.8 386 79.8
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-170 603.6 475 65.5
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.3e-168 597.0 455 67.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 3.6e-166 589.0 509 60.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.7e-161 572.8 327 85.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.1e-157 559.3 405 72.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.8e-116 422.2 318 68.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-115 421.0 238 84.5
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 3.5e-113 412.9 301 73.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.7e-99 367.5 292 64.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.5e-98 363.6 458 40.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.8e-94 349.4 249 72.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.0e-92 344.0 468 39.3
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.3e-88 330.5 200 80.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.3e-86 324.7 452 38.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 7.2e-82 308.9 227 70.0
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.3e-64 250.8 400 40.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 7.5e-63 245.7 131 90.1
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 2.7e-60 237.3 193 66.8
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 9.8e-55 218.8 170 63.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 7.0e-53 212.6 196 58.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-51 208.0 164 67.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 7.0e-45 186.0 98 90.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.9e-43 180.3 249 43.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-42 177.6 132 59.1
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 5.6e-42 176.4 124 63.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.2e-40 169.9 373 30.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.7e-38 164.9 90 90.0
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 7.0e-37 159.5 122 63.9
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.1e-33 147.9 210 41.4
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 8.9e-32 142.5 80 82.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.2e-30 137.9 91 76.9
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.9e-29 134.8 290 30.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.3e-27 128.6 74 85.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 5.6e-26 123.2 100 60.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.2e-23 115.5 100 58.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 5.4e-13 80.1 57 56.1
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.0e-12 76.6 43 76.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.0e-11 75.9 47 70.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.3e-11 75.5 41 80.5
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.0e-11 74.3 108 41.7
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 9.0e-08 62.8 35 77.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.8e-07 60.1 51 58.8
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 8.4e-06 56.2 38 71.1


User provided reference genes

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