Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 0.0e+00 1189.9 607 100.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.4e-187 659.1 618 59.4
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.8e-173 612.8 550 62.0
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.2e-154 550.1 549 56.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 5.4e-153 545.4 611 52.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 8.4e-146 521.5 518 56.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 8.4e-146 521.5 569 53.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.1e-145 518.5 581 52.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.3e-143 514.2 552 53.3
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.5e-142 510.8 565 53.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 5.6e-142 508.8 566 53.2
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.6e-139 500.0 626 48.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.0e-136 488.8 241 100.0
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.8e-135 487.3 649 46.7
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 5.6e-134 482.3 610 48.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 6.0e-128 462.2 530 50.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.0e-128 462.2 576 47.2
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.3e-127 460.3 571 46.4
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.7e-127 458.8 609 46.5
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.5e-126 457.6 576 47.4
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.5e-126 456.8 604 44.9
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.3e-126 456.4 602 46.2
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 4.3e-126 456.1 621 46.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.3e-125 454.5 601 45.8
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.2e-125 452.2 601 45.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.8e-124 450.7 605 46.3
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 6.9e-124 448.7 612 46.7
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.2e-123 448.0 602 45.8
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.6e-123 446.8 577 47.8
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 3.8e-122 443.0 618 45.3
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.1e-121 441.4 588 45.9
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.5e-121 439.1 591 44.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 6.1e-120 435.6 612 44.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 3.0e-119 433.3 662 43.2
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.9e-119 433.0 563 45.1
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 3.9e-119 433.0 541 48.6
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.4e-116 424.5 581 48.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 6.9e-116 422.2 599 45.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.2e-115 421.4 574 44.8
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 3.4e-115 419.9 538 48.5
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 3.4e-115 419.9 538 48.5
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.5e-115 419.5 620 44.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.0e-114 418.3 583 44.6
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.3e-114 417.9 619 42.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.8e-114 416.4 567 44.8
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 6.5e-114 415.6 593 43.7
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.2e-113 413.3 567 44.4
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 3.2e-113 413.3 575 44.7
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.5e-113 412.5 530 46.6
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 5.5e-113 412.5 577 44.5
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.6e-112 411.0 633 42.0
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.6e-112 409.5 361 58.7
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 7.9e-112 408.7 575 43.3
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 3.0e-111 406.8 535 46.5
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.1e-110 404.8 602 44.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.3e-110 403.3 573 43.6
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.8e-109 400.2 544 43.6
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 4.8e-109 399.4 552 43.3
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.2e-109 398.7 470 50.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.1e-108 396.7 567 43.2
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.1e-108 396.4 543 44.2
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.5e-107 394.4 603 43.9
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 2.0e-107 394.0 463 49.5
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.0e-106 391.7 601 42.3
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 2.5e-105 387.1 543 41.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.6e-104 384.4 562 42.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.6e-104 383.3 468 46.8
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.1e-104 382.5 483 46.2
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 7.9e-104 382.1 557 42.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.5e-102 377.9 606 42.4
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.3e-101 374.8 577 41.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.7e-101 374.4 593 40.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.1e-100 371.7 468 48.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.4e-100 371.3 519 44.1
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.0e-99 367.5 557 41.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 3.8e-98 363.2 570 39.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.0e-98 362.8 585 41.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.7e-96 356.3 577 41.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 6.1e-96 355.9 508 41.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.4e-95 354.8 478 45.8
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.5e-94 351.3 589 38.9
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-94 351.3 564 40.8
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 7.4e-94 349.0 582 39.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.4e-92 344.0 531 43.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.1e-92 342.0 511 41.9
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.2e-91 341.7 484 43.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 7.7e-91 339.0 509 42.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.7e-90 337.8 575 37.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.2e-90 337.4 593 37.9
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 5.5e-89 332.8 332 53.3
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 7.2e-89 332.4 540 38.7
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 9.4e-89 332.0 648 38.4
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-88 331.6 544 38.6
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.6e-88 330.1 511 41.3
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.3e-87 327.4 537 39.1
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.2e-86 325.1 557 40.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.8e-85 320.5 533 38.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.7e-85 320.1 533 38.3
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.2e-83 315.1 546 38.3
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.0e-83 314.3 546 38.3
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.0e-83 314.3 546 38.3
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.5e-78 295.8 526 37.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 9.8e-78 295.4 584 35.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.7e-77 293.5 521 36.5
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 3.1e-76 290.4 437 45.1
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.4e-76 289.7 575 35.7
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 6.1e-72 276.2 574 33.4
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.0e-71 273.9 524 35.1
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.9e-66 257.3 408 45.6
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 8.6e-58 229.2 442 38.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 7.3e-57 226.1 438 40.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.1e-56 224.6 231 54.5
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.6e-56 223.8 328 46.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.0e-55 220.3 388 41.2
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.2e-54 218.8 171 60.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.0e-54 218.0 584 31.2
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-52 211.5 397 36.8
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.4e-52 211.1 570 30.7
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.2e-47 193.4 232 44.4
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 5.1e-42 176.8 144 58.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 8.6e-42 176.0 401 35.4
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.6e-40 170.6 374 34.2
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.6e-38 164.5 302 35.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.8e-38 163.3 302 35.4
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 4.9e-37 160.2 446 30.9
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.4e-36 158.7 410 32.4
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 6.0e-35 153.3 148 52.7
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.3e-34 151.4 227 37.9
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.8e-32 144.4 214 39.7
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.7e-29 135.2 289 33.2
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.6e-27 127.1 94 59.6
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.6e-27 127.1 94 59.6
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-26 125.2 164 43.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-22 112.5 164 44.5
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.3e-21 109.0 242 30.6
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-18 96.3 359 25.1
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.6e-17 92.8 115 53.9
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 6.2e-16 90.1 256 28.5
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-14 85.9 249 28.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-14 85.9 249 28.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.2e-14 85.9 249 28.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.8e-13 80.9 251 25.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.8e-13 80.9 251 25.1


User provided reference genes

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