Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-141 506.5 257 100.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.7e-96 354.8 203 90.1
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.3e-76 290.4 201 72.1
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.9e-71 272.7 198 69.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.8e-66 256.1 197 64.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.9e-65 251.1 201 63.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-63 246.9 191 63.4
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.7e-63 246.9 200 61.5
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.1e-62 244.2 198 59.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.4e-62 243.0 191 62.8
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.2e-61 240.7 199 60.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.1e-61 240.0 191 61.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.7e-61 239.6 197 61.9
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 4.6e-61 238.8 198 61.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 6.0e-61 238.4 198 58.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-60 237.7 191 61.8
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.3e-60 236.5 198 59.1
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.5e-59 233.0 198 58.6
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 7.3e-59 231.5 198 59.6
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 7.3e-59 231.5 198 60.1
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 9.6e-59 231.1 198 59.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 9.6e-59 231.1 198 56.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.1e-58 229.9 198 56.6
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.6e-58 229.2 198 57.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.6e-58 229.2 198 56.6
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 4.8e-58 228.8 199 54.8
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 8.1e-58 228.0 198 57.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.4e-57 227.3 201 58.2
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.8e-57 226.9 198 56.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 4.0e-57 225.7 198 55.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.3e-57 225.3 203 57.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 5.3e-57 225.3 191 57.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 5.3e-57 225.3 198 56.6
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 6.9e-57 224.9 198 57.6
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.0e-57 224.6 200 57.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 9.0e-57 224.6 195 55.9
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.2e-56 224.2 195 60.0
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-56 223.4 198 57.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.6e-56 223.0 200 57.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 3.4e-56 222.6 198 55.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 7.6e-56 221.5 194 59.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 9.9e-56 221.1 195 55.4
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-55 220.7 199 58.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.7e-55 220.3 200 58.0
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-55 220.3 198 57.6
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.2e-55 219.9 196 55.1
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.2e-55 219.9 195 55.9
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.9e-55 219.5 193 54.9
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 6.4e-55 218.4 194 55.7
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.4e-55 218.4 188 56.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 8.4e-55 218.0 198 57.1
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.2e-54 216.1 198 54.0
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 4.2e-54 215.7 197 55.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 7.1e-54 214.9 198 54.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.3e-54 214.5 202 53.5
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-53 214.2 188 54.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.2e-53 214.2 189 55.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.6e-53 213.8 198 53.0
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.6e-53 213.8 198 54.5
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.6e-53 213.8 174 61.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.1e-53 213.4 195 53.8
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 6.0e-53 211.8 198 55.6
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.0e-52 211.1 195 54.4
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-52 210.3 195 54.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.0e-52 209.5 199 55.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.0e-52 209.5 188 54.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.0e-52 209.5 194 55.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 5.1e-52 208.8 198 54.5
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.7e-52 208.4 192 55.7
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 6.7e-52 208.4 197 53.3
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-51 207.6 198 52.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.1e-51 207.6 194 53.6
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-51 207.6 194 56.2
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.9e-51 206.8 194 51.5
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.9e-51 206.8 198 54.5
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.5e-51 206.5 192 55.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.5e-51 206.5 198 53.0
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.3e-51 206.1 198 53.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.4e-51 204.9 198 54.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 9.6e-51 204.5 200 53.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 9.6e-51 204.5 218 50.9
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-50 203.8 190 56.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.1e-50 203.4 198 51.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-50 203.4 199 55.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 2.8e-50 203.0 198 53.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.7e-50 202.6 211 50.7
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.2e-50 201.8 200 54.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 8.1e-50 201.4 191 56.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.1e-49 201.1 195 50.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.4e-49 200.7 176 59.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.4e-49 200.7 195 53.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.8e-49 200.3 191 50.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-49 200.3 191 55.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.4e-49 199.9 194 51.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.4e-49 199.9 199 49.7
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.1e-49 199.5 199 54.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.1e-49 199.5 200 55.5
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 3.1e-49 199.5 198 53.5
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.0e-49 199.1 245 44.1
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 5.3e-49 198.7 190 55.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 5.3e-49 198.7 199 54.8
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 5.3e-49 198.7 191 55.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.3e-49 198.7 188 55.3
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 9.0e-49 198.0 149 62.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.5e-48 197.2 195 51.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.5e-48 197.2 198 51.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.5e-48 197.2 189 50.3
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.5e-48 195.7 204 52.5
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 5.8e-48 195.3 198 51.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.8e-48 195.3 190 51.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-47 194.1 204 52.0
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-47 194.1 190 53.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-47 194.1 200 51.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-47 193.7 199 54.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.7e-47 193.7 210 51.9
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.9e-47 193.0 194 46.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 4.9e-47 192.2 199 53.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 6.4e-47 191.8 194 47.9
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.2e-46 189.1 196 51.5
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 4.2e-46 189.1 189 48.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 5.5e-46 188.7 194 46.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.5e-46 188.7 198 49.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 7.1e-46 188.3 171 53.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.2e-45 187.6 189 48.1
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.1e-45 186.8 186 53.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 2.1e-45 186.8 178 55.1
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-45 186.8 181 52.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.1e-45 186.8 198 48.5
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.7e-45 186.4 194 47.4
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.6e-45 185.7 189 47.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.9e-44 182.6 189 47.6
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.1e-44 182.2 189 47.6
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.1e-44 182.2 205 48.3
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 8.7e-44 181.4 149 59.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-43 180.6 201 49.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.3e-43 179.5 200 47.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 4.8e-42 175.6 195 47.2
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 8.2e-42 174.9 195 48.2
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-41 174.5 177 53.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.4e-39 164.9 154 56.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-38 164.1 181 50.8
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.4e-38 164.1 165 53.9
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.2e-38 162.5 189 44.4
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 2.7e-37 159.8 196 41.8
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.6e-37 159.1 189 45.5
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.0e-37 158.7 202 39.1
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.8e-36 157.1 142 49.3
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-36 156.8 195 43.6
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.0e-36 156.4 195 43.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.5e-35 154.1 194 42.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-33 147.9 199 43.7
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.4e-33 146.7 163 47.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.7e-31 140.6 127 51.2
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.2e-31 140.2 146 47.3
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 5.0e-31 139.0 203 39.9
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.9e-30 137.1 145 49.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 3.2e-30 136.3 203 39.4
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.1e-29 133.7 216 37.5
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-28 131.0 195 41.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.8e-28 130.6 130 49.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.0e-28 129.8 154 43.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.2e-26 123.6 153 45.1
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 3.4e-24 116.3 113 50.4
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 6.5e-23 112.1 115 55.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-21 107.5 191 35.6
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.1e-17 93.2 188 33.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.0e-16 90.5 84 56.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 6.5e-15 85.5 207 32.4
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 8.5e-15 85.1 185 37.3
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.5e-11 74.3 204 26.0
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-11 74.3 105 41.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-11 73.2 76 48.7
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-11 73.2 166 32.5
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 7.4e-11 72.0 100 37.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 6.3e-10 68.9 163 30.1
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.1e-09 66.2 159 32.1


User provided reference genes

Program Settings