Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 0.0e+00 1160.2 567 100.0
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 5.8e-290 1000.3 571 84.1
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 7.3e-285 983.4 559 85.0
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.1e-284 981.9 558 84.8
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 8.0e-284 979.9 559 84.6
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.0e-283 977.6 552 84.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.5e-282 975.7 564 82.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 2.0e-282 975.3 549 84.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 2.0e-282 975.3 569 82.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.6e-282 974.9 557 83.1
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 3.4e-282 974.5 551 84.4
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 7.5e-282 973.4 566 82.2
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 9.8e-282 973.0 556 83.6
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.3e-281 972.6 549 84.5
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.9e-280 968.8 552 83.2
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 9.2e-280 966.5 564 81.9
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.6e-279 965.7 552 83.2
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.1e-279 965.3 557 82.2
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.7e-279 964.9 549 83.4
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 6.0e-279 963.8 549 83.4
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 6.0e-279 963.8 567 81.8
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.0e-278 963.0 555 81.8
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.3e-278 962.6 555 82.7
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.7e-278 962.2 551 82.9
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 3.0e-278 961.4 560 82.3
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 3.0e-278 961.4 568 81.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.9e-278 961.1 551 82.6
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.5e-277 959.1 555 81.8
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.5e-277 959.1 568 81.2
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.9e-277 958.7 551 82.4
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 2.5e-277 958.4 551 83.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.5e-277 958.4 551 82.8
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.5e-277 958.4 568 81.3
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 3.3e-277 958.0 549 82.5
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.3e-277 958.0 550 82.9
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.3e-277 958.0 551 82.6
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 3.3e-277 958.0 551 82.4
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.3e-277 957.6 549 82.5
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 4.3e-277 957.6 551 82.2
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 4.3e-277 957.6 590 78.6
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 5.6e-277 957.2 549 82.5
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 5.6e-277 957.2 557 82.0
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 7.3e-277 956.8 549 82.5
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 7.3e-277 956.8 585 78.5
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 9.5e-277 956.4 555 81.3
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.6e-276 955.7 549 82.5
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.8e-276 954.9 570 80.4
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.8e-275 952.2 557 81.9
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.8e-275 952.2 551 82.2
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 3.1e-275 951.4 549 81.1
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 5.2e-275 950.7 552 82.1
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 6.8e-275 950.3 552 82.8
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 8.9e-275 949.9 573 79.8
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 8.9e-275 949.9 572 80.9
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 1.5e-274 949.1 555 80.9
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.0e-274 948.7 552 82.8
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.0e-274 948.7 552 82.4
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.0e-274 948.7 547 82.3
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 3.4e-274 948.0 555 80.5
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 4.9e-273 944.1 555 80.2
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 4.9e-273 944.1 555 80.4
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 8.3e-273 943.3 549 82.0
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.9e-272 942.2 563 79.4
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.9e-272 942.2 554 81.4
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 7.1e-272 940.3 553 81.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 2.7e-271 938.3 569 79.6
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 3.5e-271 937.9 555 80.0
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.0e-270 936.4 549 80.9
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.3e-270 936.0 555 79.3
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.7e-270 935.6 555 79.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.7e-270 935.6 569 79.4
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.7e-270 935.6 550 80.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.3e-270 935.3 568 78.7
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.3e-270 935.3 569 79.4
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 3.9e-270 934.5 555 78.9
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 4.3e-269 931.0 547 80.8
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 7.3e-269 930.2 555 80.5
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.5e-269 929.9 546 80.4
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 8.1e-268 926.8 552 79.0
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.4e-267 925.2 552 79.2
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 8.9e-267 923.3 542 81.0
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 7.6e-266 920.2 563 78.0
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 7.6e-266 920.2 550 79.8
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-265 919.1 552 79.9
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.2e-263 912.9 552 78.1
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.2e-263 912.9 541 80.0
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.2e-263 912.9 552 78.1
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.7e-262 909.1 517 83.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.1e-261 906.4 546 79.7
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.9e-261 905.6 542 80.3
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.9e-257 891.0 549 78.0
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 7.1e-256 887.1 549 78.9
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 4.6e-255 884.4 549 77.2
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 7.3e-253 877.1 542 75.5
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 8.1e-252 873.6 564 76.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.0e-250 869.0 555 75.5
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 6.4e-249 864.0 566 75.3
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-247 859.8 541 76.2
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-247 859.0 541 76.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 2.1e-247 859.0 546 76.0
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.6e-247 857.8 564 74.1
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.0e-246 856.7 549 75.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.1e-245 853.2 494 82.2
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 3.3e-245 851.7 569 73.6
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 1.7e-241 839.3 551 74.6
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 9.6e-237 823.5 551 72.1
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 4.2e-232 808.1 553 73.6
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.0e-230 803.5 548 70.3
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.9e-229 799.3 455 84.4
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.6e-228 796.2 544 71.9
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.2e-226 790.0 509 75.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.8e-222 776.2 544 68.2
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.5e-221 773.1 568 69.4
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.3e-221 771.5 549 68.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.4e-219 766.5 544 67.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 5.1e-214 748.0 424 84.9
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 9.7e-213 743.8 423 84.2
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.4e-211 739.2 549 65.4
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.9e-206 721.8 547 64.4
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.8e-203 713.0 540 66.9
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.8e-203 713.0 540 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.4e-203 712.6 533 64.9
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 8.5e-193 677.6 613 60.5
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 6.6e-161 571.6 330 83.3
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.9e-160 570.1 334 82.0
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-157 560.5 566 56.5
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.9e-147 526.9 546 51.3
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 5.6e-144 515.4 292 84.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 6.2e-135 485.3 309 77.7
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.1e-122 443.7 318 67.0
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 6.2e-119 432.2 334 65.9
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.4e-94 351.3 199 83.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.2e-91 339.7 510 43.1
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.2e-70 268.9 332 44.6
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.6e-64 250.8 192 61.5
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 9.2e-62 242.3 133 86.5
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 7.5e-56 222.6 139 77.7
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 2.3e-52 211.1 129 76.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 9.5e-51 205.7 137 71.5
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.4e-48 197.2 127 73.2
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.4e-48 197.2 127 73.2
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-46 191.8 120 73.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.4e-46 191.8 120 73.3
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 4.1e-46 190.3 109 76.1
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.9e-44 183.7 111 77.5
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 6.6e-44 183.0 126 67.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 8.6e-44 182.6 119 72.3
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 8.6e-44 182.6 119 72.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.7e-42 176.8 119 72.3
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.4e-38 165.2 95 77.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.1e-33 149.1 76 88.2
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 2.1e-29 134.8 79 81.0
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.4e-23 113.2 86 65.1
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.4e-22 112.1 189 41.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 7.1e-22 109.8 117 47.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 6.0e-21 106.7 68 70.6
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 4.0e-17 94.0 60 70.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.2e-16 92.4 63 71.4


User provided reference genes

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