Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.0e-168 596.7 300 100.0
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.0e-168 596.7 300 100.0
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.6e-145 519.6 293 88.1
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 3.0e-144 515.4 295 88.1
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.1e-143 513.5 293 87.0
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 3.4e-140 501.9 293 85.7
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.6e-134 483.0 292 83.2
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 8.1e-134 480.7 292 82.5
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 5.8e-132 474.6 292 81.5
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.3e-131 473.4 292 82.5
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.7e-131 473.0 292 81.5
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.9e-131 472.2 292 81.5
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.4e-131 470.7 271 86.7
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.4e-131 470.7 271 86.7
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 8.4e-131 470.7 292 80.5
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.1e-130 470.3 295 81.0
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.1e-130 470.3 271 86.0
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.4e-130 469.2 271 86.3
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.4e-130 469.2 294 80.6
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.4e-130 469.2 292 80.1
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.6e-129 466.5 273 83.5
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.7e-129 465.7 292 80.5
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 2.7e-129 465.7 295 80.3
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.5e-129 465.3 292 79.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 3.5e-129 465.3 292 80.1
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 3.0e-128 462.2 292 80.5
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 5.1e-128 461.5 292 78.4
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 8.7e-128 460.7 292 81.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.1e-127 460.3 293 78.8
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.3e-127 458.8 292 77.7
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.3e-127 458.8 293 78.5
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 4.3e-127 458.4 294 78.2
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 4.3e-127 458.4 295 78.6
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.6e-127 458.0 293 78.2
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 7.3e-127 457.6 266 86.1
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.3e-126 456.8 294 79.3
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.3e-126 456.8 297 78.1
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.3e-126 456.8 293 78.2
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 2.1e-126 456.1 293 78.2
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 2.8e-126 455.7 292 78.1
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 3.6e-126 455.3 291 78.7
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.6e-126 455.3 294 78.6
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 6.2e-126 454.5 297 78.8
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.1e-125 453.8 293 78.5
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.1e-125 453.8 294 78.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.4e-125 453.4 293 77.1
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.4e-125 453.4 294 78.6
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 2.4e-125 452.6 299 75.9
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.4e-125 452.6 297 77.1
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 3.1e-125 452.2 296 78.0
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 4.0e-125 451.8 271 81.2
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 5.3e-125 451.4 297 77.1
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.3e-125 451.4 271 81.9
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 6.9e-125 451.1 293 78.2
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 9.0e-125 450.7 294 77.9
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.5e-124 449.9 292 76.7
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.0e-124 449.5 300 76.0
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 2.6e-124 449.1 272 80.9
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.6e-124 449.1 294 76.5
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 3.4e-124 448.7 297 77.4
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 7.6e-124 447.6 300 75.7
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 9.9e-124 447.2 301 76.4
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 9.9e-124 447.2 295 77.3
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 9.9e-124 447.2 293 77.8
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 9.9e-124 447.2 291 78.4
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.7e-123 446.4 288 77.1
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 8.4e-123 444.1 295 76.6
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.4e-122 442.6 295 76.6
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 2.4e-122 442.6 281 78.6
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 3.2e-122 442.2 292 77.4
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 7.1e-122 441.0 285 76.1
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 7.1e-122 441.0 285 76.1
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.2e-121 440.3 292 75.0
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 2.1e-121 439.5 296 76.4
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 2.7e-121 439.1 288 77.1
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.7e-121 439.1 266 81.6
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 3.5e-121 438.7 285 75.8
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 4.6e-121 438.3 282 79.1
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 7.9e-121 437.6 294 74.5
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.0e-120 437.2 271 79.7
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 3.9e-120 435.3 279 78.5
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 6.7e-120 434.5 320 70.9
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 8.7e-120 434.1 292 75.0
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.9e-119 433.0 292 74.7
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 2.5e-119 432.6 292 75.3
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 5.6e-119 431.4 293 74.7
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 8.1e-118 427.6 292 73.3
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 3.1e-117 425.6 273 75.5
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 3.1e-117 425.6 276 75.0
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 4.0e-117 425.2 273 75.5
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 4.0e-117 425.2 273 75.5
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 4.0e-117 425.2 273 75.5
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.0e-117 425.2 295 75.6
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 4.0e-117 425.2 278 75.5
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 5.3e-117 424.9 276 74.3
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.5e-116 423.3 292 71.9
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.5e-116 423.3 292 71.9
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 2.0e-116 422.9 292 73.6
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 2.6e-116 422.5 273 74.7
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 4.5e-116 421.8 294 72.1
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 4.5e-116 421.8 292 75.7
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 5.8e-116 421.4 292 72.3
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 7.6e-116 421.0 292 71.9
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 1.0e-115 420.6 292 70.9
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-115 420.2 296 70.6
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-115 420.2 296 70.6
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 2.2e-115 419.5 273 74.4
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.9e-115 419.1 296 70.6
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 2.9e-115 419.1 277 74.4
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 3.8e-115 418.7 299 70.6
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 6.5e-115 417.9 274 74.5
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 8.4e-115 417.5 294 71.8
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.7e-113 412.5 296 74.7
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 4.6e-113 411.8 313 68.7
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 7.9e-113 411.0 255 80.0
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.3e-110 403.7 292 71.2
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 9.0e-109 397.5 292 68.2
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 3.4e-108 395.6 275 71.3
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 5.0e-107 391.7 292 70.9
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 6.5e-107 391.3 333 63.1
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 6.5e-107 391.3 272 70.2
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.1e-106 390.6 263 72.2
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 2.5e-106 389.4 292 69.2
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 3.2e-106 389.0 276 68.1
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.7e-104 380.9 275 67.6
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.9e-103 379.8 298 70.8
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 4.3e-103 378.6 275 68.7
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-102 377.1 295 65.8
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.3e-102 377.1 295 65.8
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 1.6e-102 376.7 296 66.6
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-101 374.0 292 66.8
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.4e-101 373.6 263 67.7
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.4e-101 372.9 270 68.5
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.5e-100 370.2 270 67.4
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 5.1e-96 355.1 274 63.5
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 5.7e-95 351.7 255 68.6
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 9.7e-95 350.9 270 63.7
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.8e-94 349.4 266 63.5
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-82 310.8 177 83.6
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 4.7e-81 305.4 179 82.1
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 2.0e-79 300.1 204 74.0
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.4e-69 265.4 247 55.5
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 5.9e-68 261.9 157 80.3
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.2e-66 255.8 186 64.5
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.2e-66 255.8 186 64.5
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 7.0e-61 238.4 209 61.2
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.2e-49 201.1 112 88.4
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.3e-40 170.2 113 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 7.5e-39 165.2 127 63.8
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 5.1e-35 152.5 81 87.7
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 1.3e-30 137.9 113 68.1
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 2.2e-30 137.1 71 90.1
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-29 134.8 79 79.7
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.3e-27 127.1 71 77.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 6.6e-27 125.6 164 45.7
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 3.6e-25 119.8 108 58.3
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 4.7e-25 119.4 92 67.4
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.0e-23 114.0 113 56.6
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 7.1e-21 105.5 113 53.1
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 3.5e-20 103.2 78 65.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.5e-18 97.8 71 67.6
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.0e-16 89.7 118 43.2
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.3e-14 84.7 145 41.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 2.1e-12 77.4 40 85.0
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 2.4e-08 63.9 51 66.7
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 1.2e-07 61.6 36 72.2
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 1.3e-06 58.2 58 50.0


User provided reference genes

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