Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.0e-279 967.2 1065 100.0
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 5.6e-278 961.4 1065 98.3
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 9.4e-177 625.2 1063 75.2
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 5.9e-163 579.3 1065 69.9
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 3.6e-152 543.5 1066 72.0
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 8.9e-135 485.7 746 64.9
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 2.0e-134 484.6 1068 78.0
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 3.5e-131 473.8 756 52.4
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 3.5e-131 473.8 1067 77.8
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 3.1e-127 460.7 750 64.1
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 2.6e-126 457.6 1064 76.4
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.4e-121 439.5 747 71.2
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 2.1e-120 438.0 762 64.7
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 2.8e-120 437.6 1090 69.7
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.6e-120 437.2 748 71.8
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.1e-119 435.6 752 67.3
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 2.4e-119 434.5 756 62.4
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 9.0e-119 432.6 759 65.3
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 4.5e-118 430.3 743 63.1
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 2.9e-117 427.6 711 60.3
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 3.8e-117 427.2 750 64.8
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 4.9e-117 426.8 754 62.1
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 6.4e-117 426.4 751 65.2
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 8.4e-117 426.0 744 65.6
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.9e-116 424.9 750 57.7
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 3.2e-116 424.1 760 66.2
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.2e-115 422.2 777 63.3
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.6e-115 420.2 790 63.0
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 4.6e-115 420.2 746 64.6
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 1.0e-114 419.1 749 66.6
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 1.3e-114 418.7 750 67.7
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.3e-114 418.7 744 62.5
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 1.8e-114 418.3 755 59.1
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 8.7e-114 416.0 713 56.9
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 4.3e-113 413.7 748 70.7
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 5.6e-113 413.3 749 63.6
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 9.6e-113 412.5 760 62.9
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 1.3e-112 412.1 749 69.3
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 1.6e-112 411.8 749 64.8
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 1.6e-112 411.8 750 52.3
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 3.7e-112 410.6 758 59.5
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 3.1e-111 407.5 750 56.8
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 5.8e-110 403.3 760 68.2
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 1.3e-109 402.1 750 67.5
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 1.3e-109 402.1 710 66.2
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 1.7e-109 401.7 756 65.1
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 3.8e-109 400.6 753 61.9
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 8.4e-109 399.4 717 62.5
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.4e-108 398.7 749 63.2
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.9e-108 398.3 749 63.2
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 1.2e-107 395.6 749 68.8
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 3.5e-107 394.0 755 54.6
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 3.5e-107 394.0 751 54.1
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 4.6e-107 393.7 745 60.0
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 1.3e-106 392.1 775 53.7
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 1.8e-106 391.7 749 61.8
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 7.4e-105 386.3 742 63.9
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 9.6e-105 386.0 740 59.1
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 9.6e-105 386.0 741 54.7
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.3e-104 385.6 751 58.7
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 3.7e-104 384.0 748 58.0
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 6.3e-104 383.3 754 61.8
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 1.4e-103 382.1 722 64.1
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 6.9e-103 379.8 751 58.2
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 1.2e-102 379.0 764 56.0
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 1.2e-102 379.0 755 61.5
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.5e-102 378.6 714 57.0
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 7.6e-102 376.3 750 57.7
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 2.1e-99 368.2 752 60.9
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 7.9e-99 366.3 755 58.3
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 6.7e-98 363.2 752 57.7
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 1.3e-96 359.0 738 57.7
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 1.3e-96 359.0 751 57.4
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 1.3e-96 359.0 851 56.1
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 3.7e-96 357.5 745 55.6
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 4.8e-96 357.1 752 57.2
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 1.1e-95 355.9 755 57.5
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 1.4e-95 355.5 750 54.8
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 5.9e-94 350.1 745 57.4
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 3.8e-85 320.9 230 71.3
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 1.1e-71 276.2 751 62.2
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 1.4e-71 275.8 227 62.1
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.8e-63 248.8 645 59.4
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 2.6e-57 228.4 270 45.2
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 7.5e-57 226.9 273 44.0
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 2.2e-56 225.3 719 54.4
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 1.0e-53 216.5 269 43.1
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 2.3e-53 215.3 159 66.0
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.5e-49 202.6 124 78.2
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 4.9e-48 197.6 275 41.5
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 9.5e-44 183.3 274 39.4
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 6.2e-43 180.6 272 39.0
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 1.5e-41 176.0 264 37.9
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 2.6e-41 175.3 194 50.5
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 9.2e-39 166.8 182 51.6
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 1.9e-28 132.5 175 43.4
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 6.2e-27 127.5 272 30.9
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 2.1e-22 112.5 213 36.6
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 4.6e-22 111.3 86 64.0
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 9.0e-18 97.1 271 25.5
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 9.0e-18 97.1 80 55.0
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 4.4e-17 94.7 108 46.3
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 4.9e-16 91.3 139 36.7
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.0e-13 83.6 91 42.9
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 8.7e-13 80.5 77 50.6
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 4.3e-12 78.2 50 68.0
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 3.1e-10 72.0 62 53.2
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 4.9e-08 64.7 85 38.8
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 6.4e-08 64.3 78 39.7
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 6.4e-08 64.3 85 36.5
TAR636G2077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 6.4e-08 64.3 54 57.4
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 8.4e-08 63.9 83 38.6
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.1e-07 63.5 85 38.8
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 1.9e-07 62.8 85 38.8
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.9e-07 62.8 85 38.8
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.9e-07 62.8 85 38.8
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 1.9e-07 62.8 85 36.5
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.4e-07 62.4 85 38.8
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 2.4e-07 62.4 80 40.0
QL08p037589 Quercus lobata HOM05D002479 ORTHO05D002675 3.2e-07 62.0 85 37.6
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.2e-07 61.6 85 37.6
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 5.4e-07 61.2 85 38.8
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 7.1e-07 60.8 115 33.0
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 35.3
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 37.6
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 7.1e-07 60.8 88 37.5
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 1.2e-06 60.1 88 35.2
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 1.2e-06 60.1 83 36.1
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 1.2e-06 60.1 85 37.6
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.6e-06 59.7 90 36.7
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.6e-06 59.7 90 36.7
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 85 37.6
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.6e-06 59.7 85 37.6
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 1.6e-06 59.7 85 36.5
Haze_13105 Corylus avellana HOM05D002479 ORTHO05D002675 2.1e-06 59.3 85 37.6
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 2.1e-06 59.3 85 36.5
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 2.1e-06 59.3 85 37.6
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 2.7e-06 58.9 92 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 3.5e-06 58.5 46 60.9
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 3.5e-06 58.5 157 29.9
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.5e-06 58.5 83 36.1
Cfa014560 Carpinus fangiana HOM05D002479 ORTHO05D002675 4.6e-06 58.2 85 36.5
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 4.6e-06 58.2 219 24.2
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 4.6e-06 58.2 81 39.5
Duzib212G0327 Durio zibethinus HOM05D002479 ORTHO05D002675 6.0e-06 57.8 88 36.4
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 6.0e-06 57.8 155 27.1
PSO170G3719 Papaver somniferum HOM05D002479 ORTHO05D002675 6.0e-06 57.8 92 33.7
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 7.9e-06 57.4 85 32.9


User provided reference genes

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