Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 2022.7 1025 100.0
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 1519.2 1029 75.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 1507.7 1028 74.5
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 1478.4 1028 72.6
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1238.4 1046 61.3
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1221.8 1048 60.0
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1221.1 1048 60.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 1212.2 1054 58.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 1205.7 1045 59.0
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1201.0 1042 59.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1200.7 1043 59.3
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1196.4 1046 58.9
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1194.1 1046 58.1
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1193.7 1043 59.1
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1191.4 1046 58.7
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 1186.0 1031 58.9
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1184.9 1035 58.7
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1184.9 1047 58.7
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1184.9 1059 57.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1183.7 1036 58.8
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 1182.9 1055 57.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 1176.8 1036 58.8
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1169.8 1045 57.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 1169.5 1043 57.8
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 1162.9 1065 56.2
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 1162.9 1056 57.2
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1161.0 1056 56.2
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1159.1 1048 56.9
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 1158.3 1079 56.7
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 1153.3 1040 56.4
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 1150.6 1034 57.8
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 1148.3 1046 55.8
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1146.3 1047 56.7
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1144.4 1030 57.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 1144.0 1059 56.6
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 1140.9 1043 55.8
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 1139.0 1047 56.4
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 1138.3 1043 55.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1137.5 1029 57.7
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 1136.7 1043 55.6
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 1135.6 1044 55.4
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 1135.2 1050 57.0
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 1134.8 1157 53.0
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1132.9 1046 55.4
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1132.5 1042 55.5
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1129.0 1045 55.6
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1122.8 1080 54.4
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 1122.5 1048 55.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1122.1 1080 54.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1119.0 1080 54.4
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1118.6 1047 55.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1118.2 1047 55.5
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1117.8 1047 54.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1115.9 1047 55.3
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1115.1 1032 55.2
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 1112.8 1044 54.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1112.1 1058 54.3
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1112.1 1080 54.0
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1110.5 1039 55.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 1110.5 1029 56.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1109.7 1031 55.4
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1109.0 1080 53.9
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1109.0 1080 53.9
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 1104.4 1031 56.4
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1099.7 1030 55.5
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1099.0 1035 54.1
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 1097.0 1028 54.3
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 1095.9 1033 55.3
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1095.5 1041 54.9
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 1093.2 1021 55.5
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1091.6 1030 55.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1091.6 1030 55.4
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1090.1 1033 54.2
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1088.9 1030 54.6
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1087.4 1030 54.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 1085.1 1050 53.3
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1085.1 1034 54.7
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1083.9 1041 55.2
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1082.8 1067 53.4
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1081.2 1049 53.8
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1078.9 1050 54.6
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1076.2 1043 55.1
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1075.8 1071 52.6
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 1.4e-311 1072.8 976 58.0
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 5.3e-310 1067.8 1043 54.8
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 4.6e-306 1054.7 1042 53.5
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 3.9e-305 1051.6 1030 53.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 2.6e-301 1038.9 988 55.7
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 9.7e-296 1020.4 1042 52.0
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 1.1e-291 1006.9 1101 49.0
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.1e-288 996.9 962 55.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 3.3e-288 995.3 1030 50.1
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.7e-287 993.0 962 54.8
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 7.0e-286 987.6 999 53.1
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.6e-285 986.5 962 54.8
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 2.2e-279 966.1 1030 50.7
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 1.2e-269 933.7 1076 47.0
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.1e-251 874.0 1017 47.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 7.5e-248 861.3 780 57.8
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.6e-218 763.8 635 60.9
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 4.6e-197 692.6 1109 37.9
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 3.0e-196 689.9 560 63.2
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 4.1e-185 652.9 664 52.0
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 4.4e-171 606.3 1066 35.6
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 9.7e-171 605.1 577 54.1
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 3.2e-166 590.1 499 61.1
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-161 574.3 494 59.9
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 3.1e-161 573.5 483 60.9
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.9e-158 564.3 1121 33.9
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.2e-155 555.1 576 51.6
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 7.8e-152 542.3 768 40.5
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 6.8e-148 529.3 553 52.3
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 9.5e-134 482.3 531 47.8
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.1e-126 458.8 1082 29.2
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 2.4e-105 387.9 493 42.8
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 5.6e-102 376.7 262 66.4
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 1.6e-101 375.2 385 49.6
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 5.0e-82 310.5 319 49.8
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.9e-66 258.1 323 42.4
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.8e-60 238.8 430 34.7
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.5e-57 229.2 245 47.8
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.9e-57 228.8 180 62.2
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.4e-52 212.6 172 61.6
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 8.0e-48 196.8 152 61.2
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.6e-46 191.8 122 75.4
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.8e-45 188.3 256 46.1
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 1.0e-39 169.9 123 67.5
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 7.8e-35 153.7 120 64.2
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.7e-34 152.5 114 63.2
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.8e-34 151.4 97 76.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.9e-21 108.6 81 63.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 8.6e-18 97.1 939 19.7
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-17 96.7 140 37.9
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.9e-17 95.9 64 73.4
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.2e-13 82.4 55 69.1
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.7e-13 81.6 80 50.0
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 3.2e-12 78.6 54 70.4
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 9.2e-12 77.0 76 48.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 2.1e-11 75.9 76 48.7
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.6e-10 70.9 65 46.2
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 8.1e-08 63.9 49 65.3
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 6.8e-07 60.8 55 47.3
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.9e-07 60.5 42 71.4
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.0e-06 59.3 45 62.2
SalBow5G0881 Salvia bowleyana HOM05D007202 ORTHO05D009125 4.4e-06 58.2 31 87.1


User provided reference genes

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