Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-278 962.6 518 100.0
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.4e-250 869.4 518 90.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.6e-206 723.0 428 83.9
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 6.2e-206 721.1 525 71.6
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 8.0e-206 720.7 426 83.6
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.3e-205 719.2 426 83.6
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 2.0e-204 716.1 426 83.8
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 7.5e-204 714.1 428 82.2
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 9.8e-204 713.8 424 82.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.3e-203 713.4 426 82.4
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 3.7e-203 711.8 428 82.7
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 6.4e-203 711.1 422 82.9
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 8.3e-203 710.7 426 82.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.4e-202 709.1 428 82.0
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.4e-202 709.1 428 82.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 2.4e-202 709.1 422 82.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 2.4e-202 709.1 422 82.5
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 3.2e-202 708.8 422 82.9
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.2e-202 708.8 422 82.9
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.2e-202 708.8 428 82.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 4.1e-202 708.4 424 83.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.1e-202 708.4 428 82.2
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 5.4e-202 708.0 422 82.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 9.2e-202 707.2 426 81.9
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.0e-201 706.1 426 82.2
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 3.5e-201 705.3 422 81.8
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.5e-201 705.3 428 82.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.0e-201 704.5 422 83.4
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.0e-201 704.5 422 82.0
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 6.0e-201 704.5 422 82.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 6.0e-201 704.5 426 82.2
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 6.0e-201 704.5 444 79.3
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 7.8e-201 704.1 428 80.8
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.3e-200 703.4 428 81.5
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.7e-200 703.0 428 81.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 3.0e-200 702.2 424 82.5
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 3.9e-200 701.8 424 81.8
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 3.9e-200 701.8 422 81.8
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 6.6e-200 701.0 426 80.8
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.1e-199 700.3 422 82.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.5e-199 699.9 426 80.5
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.5e-199 699.9 422 82.5
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.9e-199 699.5 424 81.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.9e-199 699.5 430 81.4
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 2.5e-199 699.1 421 82.2
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.3e-199 698.4 424 81.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.2e-198 696.8 428 80.1
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.2e-198 696.8 428 80.1
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.6e-198 696.4 428 80.4
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-198 696.4 424 80.7
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.1e-198 696.0 428 80.8
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.1e-198 696.0 449 77.5
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.2e-198 694.5 426 81.9
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 6.2e-198 694.5 421 81.9
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 8.1e-198 694.1 428 80.1
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.4e-197 693.3 422 80.8
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.1e-197 692.2 422 81.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.1e-197 692.2 426 80.3
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 4.0e-197 691.8 428 81.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.0e-197 691.8 422 80.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.9e-197 690.6 419 82.3
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 8.9e-197 690.6 428 79.9
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 2.6e-196 689.1 426 79.8
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 9.8e-196 687.2 428 79.7
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 9.8e-196 687.2 426 79.6
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.3e-195 686.8 426 79.6
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.2e-195 686.0 424 80.0
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.2e-195 686.0 424 80.2
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 4.9e-195 684.9 421 78.9
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 6.4e-195 684.5 421 79.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 6.4e-195 684.5 421 78.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 8.3e-195 684.1 421 80.5
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-194 683.3 422 80.8
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.4e-194 683.3 497 70.4
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.9e-194 682.9 418 81.6
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 2.4e-194 682.6 421 79.6
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 5.4e-194 681.4 444 77.0
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.2e-193 680.2 426 78.4
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.6e-193 679.9 426 78.4
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 6.0e-193 677.9 426 78.4
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 6.0e-193 677.9 426 78.4
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 6.0e-193 677.9 554 65.7
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 7.8e-193 677.6 426 78.2
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 7.8e-193 677.6 426 78.2
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.0e-192 677.2 426 78.6
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.7e-192 676.4 424 79.2
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.3e-192 676.0 424 79.0
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 5.1e-192 674.9 426 78.6
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.6e-192 674.1 419 79.2
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-191 672.9 426 77.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.9e-191 672.9 426 77.5
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.5e-191 672.5 426 77.7
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.5e-191 672.5 422 78.4
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.3e-191 671.8 426 77.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 9.5e-191 670.6 422 79.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.2e-190 670.2 433 78.1
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.6e-190 669.8 426 76.8
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.1e-190 669.5 490 71.0
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.1e-189 667.2 422 78.7
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.4e-189 666.8 426 77.9
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.1e-189 665.6 425 77.4
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 7.6e-188 661.0 436 78.9
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.3e-187 660.2 422 77.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.7e-187 659.8 450 73.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.7e-187 659.8 426 76.3
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.1e-186 657.1 420 76.0
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.4e-186 656.8 426 77.2
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 9.6e-183 644.0 434 74.2
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 3.6e-182 642.1 434 73.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.7e-182 641.7 563 61.8
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.1e-181 640.6 401 81.3
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.6e-175 618.2 422 71.3
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.4e-173 612.8 422 73.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.3e-171 607.1 391 78.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.2e-171 606.3 421 70.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.1e-170 601.3 424 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 5.6e-167 591.7 420 68.3
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.6e-166 590.1 420 68.1
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.1e-161 573.2 366 76.8
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.5e-151 540.4 324 82.1
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.5e-138 495.4 295 83.7
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.9e-137 491.5 289 83.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 6.7e-136 488.4 324 74.7
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 6.7e-136 488.4 422 59.5
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.7e-134 483.8 426 58.0
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 8.2e-134 481.5 297 79.8
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 1.4e-133 480.7 290 81.7
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.2e-131 473.4 420 57.1
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.9e-128 462.6 289 81.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 9.7e-119 431.4 426 55.2
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.2e-118 430.3 275 77.8
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.3e-117 425.6 289 75.4
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.9e-116 422.2 247 85.0
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.3e-98 363.2 418 44.0
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 4.6e-92 342.8 242 73.1
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 8.6e-91 338.6 422 44.1
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.3e-74 282.3 173 77.5
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.1e-67 259.6 350 43.1
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.2e-53 213.8 177 65.5
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.9e-52 209.1 131 77.9
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.5e-42 178.3 120 70.8
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.5e-42 177.6 182 50.5
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 3.3e-42 177.2 112 78.6
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.4e-40 171.0 102 82.4
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.3e-40 169.9 138 65.9
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 8.7e-35 152.5 90 74.4
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-32 145.6 90 76.7
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 2.8e-25 120.9 78 71.8
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.2e-22 111.3 67 74.6
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.2e-22 111.3 67 74.6
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.2e-22 111.3 67 74.6
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 6.5e-22 109.8 67 74.6
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-21 109.0 67 74.6
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 2.5e-21 107.8 67 73.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 9.4e-21 105.9 64 73.4
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.2e-20 105.5 82 70.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 2.0e-18 98.2 258 29.5
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.6e-15 87.8 78 61.5
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 2.6e-15 87.8 53 75.5
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.9e-15 86.7 53 73.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.9e-15 86.7 53 73.6


User provided reference genes

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