Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 0.0e+00 1282.3 679 100.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 5.5e-231 804.7 543 78.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.5e-225 785.4 498 79.3
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.7e-222 775.0 554 72.6
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.0e-221 773.9 512 78.5
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 6.0e-217 758.1 553 71.2
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.7e-209 732.6 502 74.1
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 4.4e-204 715.3 543 68.9
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.4e-204 715.3 570 65.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.3e-203 713.8 520 71.2
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.9e-202 709.9 546 66.8
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.4e-202 709.5 471 76.0
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.2e-202 707.6 534 68.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.5e-201 705.7 538 66.7
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 4.6e-201 705.3 506 72.5
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.3e-200 703.7 547 67.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 3.3e-199 699.1 553 66.7
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 5.6e-199 698.4 555 65.8
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 2.8e-198 696.0 547 67.3
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 6.8e-197 691.4 543 66.1
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.6e-196 689.5 573 64.4
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 4.4e-196 688.7 522 69.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.9e-196 687.6 550 65.5
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.9e-195 686.0 544 66.0
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.9e-195 686.0 549 65.8
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.9e-195 685.3 549 65.6
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.9e-195 685.3 532 66.7
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 4.9e-195 685.3 528 69.1
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 8.4e-195 684.5 549 65.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.4e-194 683.7 532 66.7
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 7.1e-194 681.4 532 67.1
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.6e-193 680.2 536 66.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 2.7e-193 679.5 541 66.5
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 6.0e-193 678.3 490 70.8
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.0e-192 677.6 542 66.1
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.7e-192 676.8 543 68.1
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 3.0e-192 676.0 548 66.4
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 5.1e-192 675.2 530 66.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.3e-191 672.5 543 64.8
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.3e-191 672.2 500 68.2
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.3e-191 672.2 517 66.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 7.3e-191 671.4 512 67.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.6e-190 670.2 519 67.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.6e-190 669.1 519 67.8
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.8e-190 668.7 542 65.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.8e-190 668.7 525 65.7
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.1e-189 667.5 549 65.8
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 5.3e-189 665.2 546 64.7
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 6.9e-189 664.8 550 64.4
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.2e-188 664.1 552 63.8
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 3.4e-188 662.5 552 64.3
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 5.8e-188 661.8 553 63.3
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 7.6e-188 661.4 523 66.5
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.3e-187 660.6 512 68.4
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.2e-186 656.0 517 66.2
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.4e-186 655.2 559 63.7
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.6e-185 653.7 505 67.7
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.7e-184 650.2 557 62.5
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.3e-184 649.8 529 64.1
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 3.9e-184 649.0 536 64.4
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 6.6e-184 648.3 517 64.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.1e-183 647.5 502 65.9
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.5e-183 646.4 541 64.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 3.3e-183 646.0 518 63.3
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.6e-183 645.2 501 65.9
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 6.2e-182 641.7 509 65.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 6.2e-182 641.7 559 63.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.1e-181 641.0 533 63.0
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.1e-181 641.0 470 71.7
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.4e-181 640.6 520 64.4
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 3.4e-180 636.0 576 59.7
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.3e-179 634.0 557 61.2
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.8e-179 632.5 545 63.3
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.9e-179 632.1 545 63.1
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 4.9e-179 632.1 546 62.1
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 7.1e-178 628.2 559 60.8
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 9.3e-178 627.9 548 62.0
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 1.2e-177 627.5 559 60.3
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.6e-177 627.1 526 62.0
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.6e-177 627.1 548 62.0
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.7e-177 626.3 551 60.8
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.0e-176 624.4 502 64.3
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-176 624.0 559 60.6
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 3.9e-176 622.5 542 62.2
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 5.1e-176 622.1 550 61.3
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 8.7e-176 621.3 558 60.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-175 620.9 562 60.1
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.6e-174 617.1 533 62.9
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 2.8e-174 616.3 518 64.1
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 2.8e-174 616.3 557 60.7
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 4.8e-174 615.5 537 62.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.2e-174 615.1 521 63.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.1e-173 614.4 559 60.5
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 9.0e-173 611.3 527 61.9
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.4e-172 609.4 562 58.5
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 5.8e-172 608.6 547 60.9
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.3e-171 607.4 536 60.4
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.9e-171 605.5 539 62.2
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 8.4e-171 604.7 550 59.3
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.1e-170 604.4 533 62.3
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.5e-170 603.2 466 65.7
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 9.3e-170 601.3 505 61.8
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.5e-169 599.4 543 59.3
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.5e-169 599.4 552 59.1
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 3.0e-168 596.3 470 63.8
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 5.1e-168 595.5 522 60.3
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 5.1e-168 595.5 522 60.3
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 5.1e-168 595.5 505 61.8
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.5e-167 594.0 470 63.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.5e-167 593.2 521 62.2
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.3e-167 592.4 537 60.9
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.3e-166 590.9 532 59.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 2.1e-166 590.1 539 59.6
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 3.7e-166 589.3 553 59.5
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 6.2e-166 588.6 539 59.6
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 6.2e-166 588.6 539 59.4
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.3e-165 585.5 551 59.9
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 3.4e-164 582.8 536 59.0
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 7.6e-164 581.6 518 60.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.9e-163 579.7 556 58.3
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.5e-162 576.6 539 58.6
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.2e-162 576.2 539 58.8
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.1e-161 573.5 520 60.2
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.4e-157 560.1 436 68.3
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-153 547.7 549 57.2
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.7e-153 546.6 505 57.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.8e-152 543.9 522 59.0
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 6.7e-152 542.0 516 57.8
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.7e-152 542.0 527 56.0
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 9.7e-151 538.1 383 69.5
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 4.5e-148 529.3 517 57.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.7e-147 527.3 515 55.5
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.1e-146 524.6 525 54.5
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-141 507.7 459 59.7
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.8e-139 499.6 579 52.8
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.5e-138 497.7 422 62.8
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 5.5e-138 495.7 456 57.2
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.0e-136 490.0 384 66.7
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 2.2e-134 483.8 506 52.2
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.7e-131 474.2 446 56.7
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.2e-131 473.8 517 52.2
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 3.8e-131 473.0 569 50.1
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.2e-130 468.8 337 70.3
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.8e-120 437.6 317 71.9
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 6.4e-110 402.5 390 55.4
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.4e-103 379.8 497 43.3
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 9.2e-101 372.1 371 56.1
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.1e-96 357.1 333 57.7
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 5.1e-67 260.0 163 82.8
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.7e-62 245.0 273 55.7
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.0e-55 221.5 187 63.6
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.6e-55 221.1 224 58.9
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.5e-47 193.7 138 73.2
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.3e-43 182.2 406 32.5
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 4.3e-34 150.6 478 25.3
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.0e-30 139.4 165 52.7
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 3.7e-25 120.9 435 23.7
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.8e-24 118.6 104 54.8
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 1.2e-23 115.9 78 66.7
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 7.7e-23 113.2 85 62.4
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 6.5e-22 110.2 84 61.9
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.7e-17 95.5 72 66.7
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 1.8e-16 92.0 83 60.2
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 5.3e-16 90.5 90 61.1
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.7e-15 86.7 95 51.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 2.5e-13 81.6 101 46.5
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 4.7e-12 77.4 99 42.4
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 6.1e-12 77.0 103 44.7
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.7e-07 61.6 35 80.0
Lalb_Chr14g0368481 Lupinus albus HOM05D001905 ORTHO05D001820 3.8e-06 57.8 437 23.3
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 5.0e-06 57.4 68 48.5
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 8.5e-06 56.6 58 55.2


User provided reference genes

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