Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 2962.9 1544 100.0
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 2083.9 1569 73.0
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 2028.4 1538 72.7
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1855.1 1369 72.1
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1797.7 1600 64.2
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1769.2 1551 62.6
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1748.0 1370 66.7
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1710.3 1584 59.8
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1706.0 1574 59.4
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1691.4 1541 60.7
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1691.4 1541 60.7
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1675.2 1572 59.2
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1669.1 1579 58.1
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1659.0 1544 61.2
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1597.4 1349 62.3
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1593.6 1400 60.0
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1588.2 1556 58.8
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1574.3 1394 60.0
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1574.3 1382 60.6
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1573.9 1423 59.2
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1568.9 1369 61.7
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1568.5 1392 59.6
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1567.7 1400 59.9
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1567.4 1400 59.9
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1559.7 1415 59.2
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1556.6 1050 73.4
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1545.4 1411 59.1
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1541.6 1397 59.3
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1538.9 1379 59.0
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1538.9 1392 58.8
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1537.7 1399 58.9
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1537.7 1535 55.8
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1526.1 1393 58.8
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1522.7 1396 59.2
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1522.7 1400 58.8
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1522.3 1396 59.0
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1521.9 1359 60.6
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1521.5 1394 59.0
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1519.2 1393 59.1
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1517.7 1395 57.3
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1516.1 1394 58.4
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1513.4 1341 58.8
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1506.9 1394 57.6
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1503.4 1381 58.4
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1501.9 1392 58.3
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1500.3 1587 54.9
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1500.0 1410 56.3
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1493.0 1336 58.2
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1489.6 1389 58.2
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1487.2 1389 58.2
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1484.9 1392 57.8
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1484.5 1394 57.2
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1478.4 1290 60.4
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1470.7 1377 57.3
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1461.8 1399 54.8
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1461.4 1244 61.3
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1459.5 1437 53.6
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1458.4 1367 56.6
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1454.9 1485 56.0
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1437.9 1270 59.7
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1435.6 1488 55.1
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1434.5 1343 56.1
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1425.2 1371 56.4
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1412.9 1348 56.3
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1404.4 1487 54.1
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1394.4 1350 54.5
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1394.0 1319 56.2
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1365.1 1377 53.1
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1362.8 1382 53.1
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1357.4 1365 53.1
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1353.2 1336 53.2
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1349.7 1356 53.1
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1342.4 1377 53.9
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1341.3 1344 54.6
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1334.3 1379 53.3
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1330.9 1360 52.5
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1329.3 1338 52.7
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1326.6 1380 52.4
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1326.6 1360 52.4
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1324.3 1187 60.0
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1319.3 1374 51.9
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1317.0 1363 52.2
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1312.4 1030 63.1
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1295.4 1209 57.3
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1284.2 1324 53.9
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1273.5 883 72.3
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1250.0 1363 50.6
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1227.6 787 76.7
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1216.4 1172 57.6
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1213.4 1405 48.2
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1162.9 1096 58.7
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1139.4 870 64.9
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1089.7 788 68.4
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 4.0e-309 1065.4 883 61.3
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 8.6e-296 1021.1 1093 49.6
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 3.4e-292 1009.2 1054 50.7
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 4.4e-284 982.2 1045 49.8
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 7.0e-282 974.9 890 59.8
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 2.4e-250 870.2 1061 46.8
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 3.7e-238 829.7 499 80.2
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 4.7e-217 759.6 843 49.8
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.2e-203 714.1 864 49.0
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.4e-189 668.3 828 45.5
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.4e-173 614.4 719 49.5
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 3.9e-171 607.1 488 63.7
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 6.2e-161 573.2 732 47.5
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 6.2e-161 573.2 509 58.0
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 1.8e-160 571.6 732 47.5
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 2.0e-151 541.6 373 71.8
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 4.0e-144 517.3 309 78.0
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.4e-112 412.5 345 60.3
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 6.1e-108 397.1 293 66.6
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 8.2e-97 360.1 568 41.0
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.2e-95 356.3 252 71.0
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 8.8e-83 313.5 207 69.1
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 3.4e-82 311.6 709 39.5
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.0e-79 302.4 206 68.9
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 5.0e-78 297.7 522 40.8
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.7e-71 275.4 173 74.6
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 3.3e-69 268.5 229 58.5
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 4.7e-68 264.6 925 25.5
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 9.2e-64 250.4 681 29.2
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 1.2e-63 250.0 613 36.4
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 6.0e-55 221.1 718 25.9
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 7.8e-55 220.7 145 69.7
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.2e-48 198.7 160 61.2
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.2e-44 186.8 133 69.2
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 6.8e-43 181.0 139 65.5
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 1.2e-39 170.2 104 79.8
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 1.2e-39 170.2 125 67.2
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.7e-38 166.4 176 52.3
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.9e-37 162.9 232 43.1
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.6e-36 159.8 434 32.0
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 4.7e-36 158.3 144 56.9
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 4.4e-34 151.8 79 96.2
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 4.6e-31 141.7 680 23.8
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 7.3e-29 134.4 125 58.4
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 9.6e-29 134.0 81 80.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 1.5e-26 126.7 76 73.7
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.1e-24 120.6 156 42.9
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 5.4e-24 118.2 103 52.4
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 2.7e-23 115.9 328 32.0
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 2.7e-23 115.9 80 67.5
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.3e-22 113.6 134 46.3
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 5.1e-22 111.7 111 55.0
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 7.4e-21 107.8 78 69.2
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 1.3e-20 107.1 75 72.0
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-19 103.6 102 50.0
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 2.6e-18 99.4 106 53.8
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.9e-17 95.9 147 42.2
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 2.9e-17 95.9 64 70.3
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 6.4e-17 94.7 76 60.5
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 9.3e-16 90.9 136 44.1
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 3.5e-15 89.0 97 51.5
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 5.1e-14 85.1 46 73.9
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 6.7e-14 84.7 91 41.8
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 5.6e-13 81.6 83 56.6
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 7.4e-13 81.3 67 58.2
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.8e-11 76.6 61 63.9
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 4.0e-11 75.5 87 51.7
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 2.9e-09 69.3 75 54.7
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 2.9e-09 69.3 47 70.2
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 8.4e-09 67.8 36 80.6
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 1.4e-08 67.0 70 48.6
FAN27G1082 Fragaria x ananassa HOM05D002132 ORTHO05D002168 4.2e-08 65.5 390 21.8
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 7.1e-08 64.7 112 40.2
MELO3C016890.2 Cucumis melo HOM05D002132 ORTHO05D002168 4.6e-07 62.0 303 20.5
unitig_0.g2556 Utricularia gibba HOM05D002132 ORTHO05D002168 7.9e-07 61.2 304 21.7
Hma1.2p1_1126F.1_g259655 Hydrangea macrophylla HOM05D002132 ORTHO05D002168 1.0e-06 60.8 314 21.3
SalBow4G2233 Salvia bowleyana HOM05D002132 ORTHO05D002168 1.0e-06 60.8 310 21.6
BcaC09g52110 Brassica carinata HOM05D002132 ORTHO05D002168 1.3e-06 60.5 423 21.7
Os08g0398700 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 1.3e-06 60.5 316 21.8
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 1.3e-06 60.5 314 21.7
BcaC09g52106 Brassica carinata HOM05D002132 ORTHO05D002168 1.8e-06 60.1 423 21.5
Psat5g032480 Pisum sativum HOM05D002132 ORTHO05D002168 2.3e-06 59.7 317 22.1
Migut.A00105 Erythranthe guttata HOM05D002132 ORTHO05D002168 5.1e-06 58.5 310 21.3
Medtr3g104720 Medicago truncatula HOM05D002132 ORTHO05D002168 6.7e-06 58.2 314 21.0
Manes.16G083000 Manihot esculenta HOM05D002132 ORTHO05D002168 8.7e-06 57.8 314 20.4


User provided reference genes

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