Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 0.0e+00 1330.9 689 100.0
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.3e-307 1059.3 666 82.6
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 3.8e-296 1021.1 666 78.4
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 7.0e-290 1000.3 665 78.6
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 6.4e-275 950.7 661 74.9
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.2e-274 948.3 661 74.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.7e-267 926.0 659 72.2
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.9e-266 922.5 659 72.1
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 2.4e-266 922.2 663 72.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 7.8e-265 917.1 659 71.9
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 7.8e-265 917.1 659 71.8
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 5.0e-264 914.4 664 71.4
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.9e-263 912.5 659 71.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 4.3e-263 911.4 664 71.1
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 5.6e-263 911.0 661 71.3
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.1e-262 909.1 667 71.2
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 6.2e-262 907.5 662 71.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.0e-261 904.8 647 72.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 8.9e-261 903.7 660 71.2
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.0e-260 902.5 662 71.1
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 4.4e-260 901.4 665 69.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.5e-260 900.6 652 71.5
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.4e-258 895.6 648 72.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.2e-257 893.3 659 70.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 4.6e-257 891.3 667 68.1
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 6.0e-257 891.0 666 67.9
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 6.0e-257 891.0 661 67.9
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 6.0e-257 891.0 661 70.2
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.0e-256 890.2 660 70.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 2.3e-256 889.0 667 67.8
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 2.3e-256 889.0 662 68.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 6.6e-256 887.5 660 70.3
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.5e-255 886.3 667 67.9
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 4.3e-255 884.8 662 69.8
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 7.3e-255 884.0 660 70.2
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 9.5e-255 883.6 663 67.9
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 3.6e-254 881.7 664 70.0
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 6.2e-254 880.9 659 70.1
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 8.1e-254 880.6 663 69.1
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 3.1e-253 878.6 667 67.0
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 4.0e-253 878.2 661 69.1
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 6.8e-253 877.5 666 69.4
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.6e-252 875.5 659 68.6
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.4e-252 874.8 663 70.3
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.7e-251 872.8 667 67.5
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.6e-249 866.3 659 69.3
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.7e-249 865.5 655 69.5
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 4.6e-249 864.8 659 69.8
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 3.0e-248 862.1 661 67.3
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 3.0e-248 862.1 654 67.9
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.5e-247 859.8 667 68.4
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.9e-247 859.4 661 67.6
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.9e-247 859.4 660 68.0
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.2e-246 856.7 654 68.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.2e-246 856.7 657 67.6
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.8e-246 855.5 662 66.5
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 8.1e-246 854.0 658 67.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.8e-245 852.8 656 68.4
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.4e-245 852.4 657 67.6
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.2e-244 850.1 696 64.8
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 3.4e-244 848.6 655 67.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 7.6e-244 847.4 668 66.0
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 3.8e-243 845.1 655 67.5
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 8.4e-243 844.0 657 67.4
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.1e-242 843.6 657 67.4
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.4e-242 841.3 647 68.6
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 3.5e-241 838.6 665 65.6
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.5e-239 833.2 662 66.2
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.4e-237 825.9 695 64.3
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 5.3e-237 824.7 614 69.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.5e-236 823.2 695 64.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.7e-235 819.7 659 66.2
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.1e-234 817.0 660 65.9
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.2e-233 813.5 650 66.5
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.3e-232 810.1 694 63.0
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 8.1e-230 800.8 664 63.0
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.6e-228 795.8 620 67.4
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 7.6e-228 794.3 587 69.7
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 6.0e-225 784.6 606 67.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 3.9e-224 781.9 667 63.4
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 5.6e-223 778.1 870 52.9
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 4.8e-222 775.0 597 67.5
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.6e-220 769.2 586 68.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 9.3e-218 760.8 741 57.2
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 5.3e-213 745.0 662 60.1
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.4e-212 742.3 662 60.0
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.2e-206 723.0 680 57.8
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.9e-202 709.9 658 58.7
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 3.6e-201 705.7 663 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.5e-186 655.2 671 54.5
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.5e-186 655.2 479 71.2
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.4e-183 645.6 574 60.1
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 8.2e-182 641.3 850 46.4
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 5.3e-181 638.6 507 66.9
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.8e-168 595.1 586 54.8
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.8e-165 587.0 478 64.6
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.3e-158 561.6 605 53.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 5.6e-154 548.9 495 61.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.8e-144 517.3 436 62.2
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.5e-122 443.7 437 57.0
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 4.8e-113 412.9 461 49.5
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.3e-105 388.3 345 59.7
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 4.8e-81 306.6 453 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.5e-79 300.1 411 43.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.4e-75 288.5 232 59.9
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.4e-74 283.5 207 71.5
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.8e-73 280.0 203 71.9
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.7e-65 253.8 181 69.1
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 5.5e-61 240.0 390 41.3
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.1e-60 238.0 170 68.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 4.8e-57 226.9 294 48.0
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 7.0e-56 223.0 250 53.6
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 5.9e-47 193.4 137 73.0
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.6e-42 177.9 167 60.5
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-42 177.2 448 32.1
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.5e-37 161.4 147 57.8
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.6e-34 151.4 146 55.5
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 3.2e-32 144.4 631 28.5
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 9.2e-32 142.9 93 75.3
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.6e-31 142.1 97 72.2
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 2.7e-31 141.4 82 79.3
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 6.6e-30 136.7 94 72.3
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 8.6e-30 136.3 164 48.2
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 2.8e-28 131.3 79 77.2
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 5.2e-27 127.1 96 66.7
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 8.9e-27 126.3 90 67.8
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.6e-26 124.8 117 56.4
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 4.4e-26 124.0 164 45.1
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 4.1e-24 117.5 85 71.8
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.2e-20 105.9 197 38.1
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.5e-18 99.0 92 60.9
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.6e-18 98.2 159 40.3
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 5.8e-18 97.1 65 70.8
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.2e-17 95.1 96 57.3
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 3.8e-17 94.4 55 81.8
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.1e-13 82.8 61 72.1
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 7.3e-13 80.1 63 61.9
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.6e-12 79.0 50 74.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.6e-12 79.0 50 74.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-11 74.7 51 64.7
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 2.0e-10 72.0 50 66.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 4.4e-10 70.9 98 49.0
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 3.0e-06 58.2 44 70.5
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 3.0e-06 58.2 62 45.2


User provided reference genes

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