Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 7.1e-119 430.6 220 100.0
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 6.2e-107 391.0 220 89.5
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.4e-106 389.0 220 88.6
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 6.8e-106 387.5 220 90.0
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 3.4e-105 385.2 220 88.2
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.7e-104 382.9 222 87.8
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.7e-104 382.9 222 87.8
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.7e-104 382.9 216 87.5
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 6.4e-104 380.9 220 87.7
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.1e-103 380.2 220 87.7
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.1e-103 380.2 218 87.6
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 9.3e-103 377.1 220 85.0
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 9.3e-103 377.1 220 86.4
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 2.1e-102 375.9 220 85.0
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.7e-102 375.6 218 87.6
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.5e-102 375.2 218 84.9
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 4.6e-102 374.8 220 85.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 4.6e-102 374.8 221 85.1
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 6.0e-102 374.4 222 86.0
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 7.8e-102 374.0 221 85.5
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.3e-101 373.2 221 86.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.7e-101 372.9 218 85.8
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.7e-101 372.9 220 85.5
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.3e-101 372.5 222 85.6
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.0e-101 372.1 220 85.5
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 3.0e-101 372.1 218 85.3
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 3.9e-101 371.7 219 85.4
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 5.1e-101 371.3 218 85.3
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 5.1e-101 371.3 222 84.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 5.1e-101 371.3 222 85.1
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 5.1e-101 371.3 220 84.1
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 8.7e-101 370.5 222 84.7
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 222 84.2
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 1.9e-100 369.4 217 84.3
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.3e-100 368.2 219 84.0
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.6e-100 367.9 222 83.3
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 7.3e-100 367.5 221 84.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.3e-99 366.7 220 84.5
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.3e-99 366.7 220 82.3
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.3e-99 366.7 218 84.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 83.6
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 84.2
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 2.8e-99 365.5 220 83.6
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 83.7
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 4.8e-99 364.8 221 82.4
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 4.8e-99 364.8 221 83.7
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 4.8e-99 364.8 221 83.7
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 4.8e-99 364.8 221 83.7
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 83.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.2e-99 364.4 220 81.8
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.1e-99 364.0 218 82.1
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.1e-99 364.0 220 81.8
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.4e-98 363.2 221 83.7
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 222 82.9
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.4e-98 362.5 221 83.3
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.1e-98 362.1 220 80.5
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 3.1e-98 362.1 219 82.2
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 4.0e-98 361.7 222 84.2
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 82.7
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 5.3e-98 361.3 221 83.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 82.8
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 82.4
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 82.4
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 83.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 82.8
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 82.8
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 9.0e-98 360.5 220 82.3
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 82.8
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.5e-97 359.8 220 81.8
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.5e-97 359.8 220 82.3
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 3.4e-97 358.6 218 81.7
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 4.4e-97 358.2 221 82.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 5.8e-97 357.8 221 82.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 80.0
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 7.6e-97 357.5 217 83.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.4
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 83.6
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 81.7
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 81.7
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 84.0
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 81.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 81.0
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 81.8
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 3.8e-96 355.1 219 84.0
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.8e-96 355.1 219 84.9
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 4.9e-96 354.8 231 80.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 80.7
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 6.4e-96 354.4 219 83.1
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 1.4e-95 353.2 215 83.3
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.4e-95 353.2 218 81.7
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.9e-95 352.8 219 84.0
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 80.3
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 80.3
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 79.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 80.0
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 3.2e-95 352.1 219 83.1
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 4.2e-95 351.7 220 79.1
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 5.4e-95 351.3 219 82.6
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 9.3e-95 350.5 220 79.5
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 9.3e-95 350.5 220 79.5
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.3e-95 350.5 218 79.8
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 81.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.6e-94 349.7 219 80.4
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.1e-94 349.4 219 82.2
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.5e-94 348.6 226 80.1
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 3.5e-94 348.6 218 80.7
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 78.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 82.6
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 6.0e-94 347.8 215 81.9
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 7.9e-94 347.4 219 81.3
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 7.9e-94 347.4 219 81.3
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.0e-93 347.1 221 78.7
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 77.7
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 79.5
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 4.3e-92 341.7 221 80.5
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 4.3e-92 341.7 221 79.2
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 5.6e-92 341.3 215 79.1
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.6e-91 339.7 220 80.0
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.6e-91 339.7 216 80.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 8.4e-88 327.4 220 78.2
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 4.8e-83 311.6 194 79.4
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 8.1e-83 310.8 224 72.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 5.8e-81 304.7 165 88.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.2e-80 302.8 175 81.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.6e-78 296.6 194 77.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 1.6e-78 296.6 163 87.1
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 4.1e-74 282.0 222 66.7
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.9e-74 281.2 165 84.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.7e-72 276.6 227 64.8
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.9e-72 275.8 226 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 3.8e-72 275.4 223 68.2
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 8.5e-72 274.2 220 69.5
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.9e-71 273.1 229 64.6
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 9.4e-63 244.2 220 62.3
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 5.7e-60 235.0 215 58.6
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 5.7e-60 235.0 221 61.5
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 2.5e-47 193.0 190 55.8
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 3.2e-47 192.6 183 57.4
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.6e-46 189.1 140 75.7
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 4.0e-45 185.7 127 73.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 4.8e-43 178.7 150 58.0
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 6.3e-27 125.2 106 64.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.6e-16 88.2 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 8.6e-16 88.2 59 72.9
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 7.8e-09 65.1 56 64.3
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.0e-08 64.7 58 63.8
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 7.3e-07 58.5 101 39.6


User provided reference genes

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