Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.2e-245 852.8 474 100.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.9e-129 466.8 394 72.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.3e-122 443.4 394 66.0
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.5e-121 440.7 368 76.1
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.5e-121 440.7 394 65.7
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.1e-120 436.8 394 64.5
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.7e-120 435.6 394 65.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.2e-120 435.3 394 64.5
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 8.1e-120 434.9 399 62.7
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 8.1e-120 434.9 394 65.0
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-119 434.5 394 64.2
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.1e-119 434.5 399 62.9
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.6e-118 429.9 394 62.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 7.5e-118 428.3 399 61.9
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 9.9e-118 427.9 393 63.6
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.7e-117 427.2 394 64.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.2e-117 426.8 384 65.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 2.2e-117 426.8 394 64.0
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 2.9e-117 426.4 396 66.4
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 8.3e-117 424.9 394 62.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.9e-116 423.7 395 63.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.2e-116 422.9 394 63.2
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-115 420.6 394 60.7
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.5e-115 419.5 387 63.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.7e-114 417.2 394 60.7
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 5.1e-114 415.6 393 63.1
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.1e-114 415.6 394 61.9
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.6e-114 415.2 394 61.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.9e-113 413.7 394 62.2
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.3e-113 412.5 396 62.1
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.3e-113 412.5 389 62.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.3e-113 412.5 394 60.7
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 5.6e-113 412.1 394 62.2
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 7.3e-113 411.8 394 61.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 7.3e-113 411.8 394 61.9
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 9.5e-113 411.4 394 62.4
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.5e-113 411.4 394 62.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.8e-112 409.8 394 62.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.8e-112 409.8 394 60.9
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.6e-112 409.5 394 60.9
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.7e-112 409.1 386 61.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.7e-112 409.1 394 60.9
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.2e-112 408.7 394 62.2
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.1e-111 407.9 394 61.9
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.8e-111 407.1 368 65.8
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.4e-111 406.8 398 66.1
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.4e-111 406.8 443 54.0
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.8e-111 405.2 394 60.2
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 6.8e-111 405.2 394 60.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.8e-111 405.2 394 66.5
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 8.9e-111 404.8 394 59.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.2e-110 404.4 394 59.4
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 4.4e-110 402.5 390 62.6
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.3e-109 401.0 394 60.2
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.7e-109 400.6 394 60.4
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.2e-109 400.2 394 59.4
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.8e-109 399.4 394 60.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 8.4e-109 398.3 390 59.7
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.1e-108 397.9 384 60.7
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 7.1e-108 395.2 390 61.5
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 2.1e-107 393.7 396 59.3
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.7e-107 393.3 265 78.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.7e-107 393.3 394 58.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.5e-107 392.9 394 57.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.7e-106 390.6 386 59.6
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.3e-106 390.2 364 62.6
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.3e-106 390.2 389 58.1
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.9e-105 387.1 394 58.9
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.9e-105 387.1 394 59.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.5e-105 386.7 394 64.7
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.6e-104 382.9 394 58.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.0e-102 377.1 386 58.5
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.4e-102 375.9 394 62.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 4.4e-102 375.9 396 58.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 9.9e-102 374.8 379 59.1
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.7e-101 374.0 380 58.7
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 2.9e-101 373.2 392 57.4
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 6.4e-101 372.1 392 57.7
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.1e-100 371.3 394 57.9
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 5.4e-100 369.0 389 56.6
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.0e-98 364.8 394 62.2
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.3e-98 363.6 394 57.1
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.1e-95 354.8 394 55.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.1e-95 354.8 394 55.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.4e-95 354.4 394 54.1
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.8e-94 349.0 263 71.9
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 7.6e-94 348.6 394 54.1
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 8.4e-93 345.1 394 54.8
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 9.3e-92 341.7 394 59.6
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.2e-91 341.3 263 68.8
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.5e-91 339.7 387 53.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.0e-90 338.2 394 52.3
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 3.9e-90 336.3 237 75.1
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 8.7e-90 335.1 395 53.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.5e-89 334.3 394 58.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.5e-89 334.3 422 51.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.5e-89 333.6 394 58.4
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.8e-88 330.1 394 59.9
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 6.9e-87 325.5 420 50.2
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.5e-86 324.3 395 52.7
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.7e-83 313.5 396 50.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.9e-82 309.7 394 50.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 6.7e-82 308.9 382 50.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.9e-81 307.4 368 55.2
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 3.3e-81 306.6 394 50.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.1e-80 303.9 395 48.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.0e-79 298.5 264 62.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 9.0e-79 298.5 390 49.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-77 293.9 397 47.9
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.9e-77 293.5 384 56.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.3e-74 284.6 263 64.3
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.7e-74 282.0 399 46.9
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.5e-73 280.4 396 46.2
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.6e-72 277.7 389 49.9
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 3.7e-72 276.6 394 47.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.2e-72 275.4 398 46.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 8.2e-72 275.4 397 46.3
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.5e-70 271.2 394 47.7
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.4e-70 270.0 370 51.9
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.9e-69 266.9 241 62.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.4e-68 264.6 385 47.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 3.6e-67 260.0 402 45.8
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 3.6e-67 260.0 402 45.8
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.6e-67 260.0 372 47.0
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-66 258.1 402 45.3
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 8.8e-66 255.4 395 45.6
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.5e-65 254.6 394 46.4
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.2e-64 250.8 368 45.1
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.4e-63 247.3 397 44.8
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.3e-61 241.5 365 45.2
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.9e-59 232.3 394 41.9
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.6e-57 227.3 395 42.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.7e-57 226.1 395 41.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 4.8e-56 223.0 396 42.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.3e-56 222.6 392 41.3
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.4e-54 216.9 353 44.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.7e-54 215.7 394 40.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.2e-53 214.2 371 42.3
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 3.2e-52 210.3 367 42.2
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.1e-51 207.6 338 42.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.3e-50 204.1 360 49.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 5.2e-50 203.0 264 49.2
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 8.8e-50 202.2 403 45.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-49 201.4 329 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 3.3e-49 200.3 396 35.9
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-49 200.3 391 40.2
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-49 200.3 330 43.3
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 5.7e-49 199.5 329 43.8
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.2e-48 197.6 388 42.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 4.8e-48 196.4 392 38.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 4.1e-47 193.4 329 42.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 7.7e-46 189.1 370 38.1
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.8e-45 186.8 319 42.3
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 8.5e-45 185.7 185 55.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 9.7e-41 172.2 392 33.9
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 8.2e-40 169.1 339 37.5
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 8.5e-37 159.1 215 47.9
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.2e-36 156.0 230 45.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.0e-33 147.9 187 53.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 6.3e-32 142.9 225 43.6
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.4e-31 141.0 221 45.7
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.1e-31 140.6 352 35.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 4.0e-26 123.6 201 44.3
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-21 108.2 370 31.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 5.6e-20 103.2 333 31.5
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 4.6e-14 83.6 341 31.4
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.0e-13 82.4 229 31.9
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.0e-13 82.4 229 31.9
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.1e-12 79.0 89 55.1
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 7.3e-12 76.3 341 35.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.2e-11 75.5 57 70.2
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.7e-11 73.6 49 79.6


User provided reference genes

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