Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 0.0e+00 1634.4 799 100.0
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 9.7e-259 897.1 802 59.7
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.8e-257 892.9 817 58.4
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.0e-231 807.4 806 54.7
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 8.6e-207 724.5 819 48.8
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.7e-194 683.7 795 48.6
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 6.4e-194 681.8 812 46.2
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 5.4e-193 678.7 818 46.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.3e-190 669.1 803 45.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.2e-189 667.5 600 57.7
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.8e-189 666.4 804 45.1
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 3.6e-189 666.0 798 46.2
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 4.7e-189 665.6 805 46.6
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.7e-189 665.6 816 46.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.1e-188 664.5 817 46.8
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 3.4e-187 659.4 801 45.9
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.9e-186 656.4 804 46.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.9e-186 656.4 801 46.1
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.1e-185 654.4 804 44.9
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.1e-185 654.4 801 46.1
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.4e-185 652.1 804 46.4
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.1e-184 650.2 827 45.7
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 3.9e-183 646.0 802 46.5
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 5.6e-182 642.1 809 45.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 9.6e-182 641.3 812 46.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.2e-180 635.6 807 45.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 5.2e-180 635.6 820 45.7
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.6e-179 633.3 808 43.9
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 3.8e-178 629.4 814 44.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.9e-178 629.0 813 45.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.4e-178 628.6 814 44.0
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-177 627.9 803 43.7
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.9e-177 627.1 820 42.7
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.4e-177 626.7 840 44.5
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.1e-176 623.6 840 44.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 2.7e-176 623.2 804 43.5
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 4.6e-176 622.5 810 45.2
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.6e-176 622.5 811 45.4
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 8.7e-175 618.2 818 44.4
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 8.7e-175 618.2 812 43.0
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.1e-174 617.8 788 45.1
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.5e-174 616.7 830 45.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.3e-174 615.1 812 45.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 7.3e-174 615.1 826 44.6
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 3.6e-173 612.8 821 43.5
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.1e-172 611.3 831 43.7
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.4e-172 610.9 840 43.2
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.3e-172 609.0 847 43.7
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 4.4e-171 605.9 835 44.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.4e-169 600.1 827 43.2
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 3.2e-169 599.7 841 42.3
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-168 597.8 823 43.6
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.7e-168 596.7 826 43.3
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.7e-168 596.7 826 43.3
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-167 594.3 811 42.4
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.7e-167 594.0 850 43.5
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.3e-167 593.6 801 44.1
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 3.9e-167 592.8 824 44.7
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 5.1e-167 592.4 809 42.0
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 6.6e-167 592.0 788 43.3
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.2e-165 585.5 798 43.0
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 8.1e-165 585.1 803 42.7
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 9.3e-161 571.6 794 42.9
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.5e-160 569.7 827 43.5
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 4.6e-160 569.3 791 42.4
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.3e-159 567.8 798 42.6
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.3e-159 567.0 791 42.1
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 8.7e-159 565.1 808 42.9
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-158 564.3 759 42.2
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-158 563.5 811 40.2
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.5e-158 563.5 807 41.3
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 3.3e-158 563.1 795 42.4
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 3.3e-158 563.1 794 41.8
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 3.3e-158 563.1 806 40.3
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 5.6e-158 562.4 820 41.2
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.1e-156 558.1 814 41.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 4.0e-156 556.2 805 42.1
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 4.0e-156 556.2 805 42.1
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.5e-155 554.3 794 40.6
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.4e-155 553.1 818 41.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 4.5e-155 552.7 817 41.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 8.4e-154 548.5 890 40.2
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.1e-153 548.1 817 40.0
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 3.2e-153 546.6 804 42.4
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.1e-152 543.9 805 41.5
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 6.0e-152 542.3 794 40.9
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 6.0e-152 542.3 814 41.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.0e-151 541.6 869 39.7
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.5e-150 537.7 799 40.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-148 531.6 704 43.0
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.5e-147 527.7 792 40.4
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.8e-146 523.1 809 40.0
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 5.0e-146 522.7 795 40.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 4.2e-145 519.6 877 38.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.6e-144 516.5 792 40.2
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.6e-144 516.5 792 40.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 8.7e-143 511.9 795 40.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 8.7e-143 511.9 688 42.6
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.7e-141 506.5 682 43.3
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.0e-138 498.4 862 38.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.7e-138 497.7 801 39.7
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 7.2e-137 492.3 628 44.9
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.5e-134 484.6 830 37.6
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 4.4e-134 483.0 545 48.6
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 6.5e-130 469.2 795 37.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.6e-128 463.4 792 38.0
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.4e-124 450.7 685 40.3
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.7e-120 436.4 561 46.0
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.0e-119 433.3 560 44.8
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.4e-116 424.9 667 41.1
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 5.2e-111 406.4 638 40.1
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.8e-109 399.8 565 42.5
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.9e-105 387.9 674 37.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 9.8e-102 375.6 511 43.2
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.3e-101 375.2 809 34.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 6.1e-96 356.3 564 40.2
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.1e-88 331.3 573 36.5
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.3e-81 307.0 505 38.2
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 5.2e-79 300.1 493 39.4
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 9.5e-73 279.3 175 76.6
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.6e-72 277.3 389 41.4
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.7e-72 276.9 480 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.3e-71 274.6 841 29.3
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.1e-71 274.2 488 36.9
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.0e-70 271.6 307 47.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 9.2e-68 262.7 528 31.2
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.7e-66 258.5 718 29.8
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.6e-65 253.4 626 29.9
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.4e-62 243.8 330 43.9
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.8e-56 224.6 228 52.6
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.8e-55 221.9 267 48.7
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 7.6e-54 216.5 178 61.2
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.9e-53 213.8 581 30.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 6.0e-51 206.8 204 54.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.0e-47 194.1 219 48.4
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.9e-45 188.0 326 38.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.9e-44 185.3 154 59.7
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.3e-40 172.6 170 53.5
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 2.2e-37 161.8 237 42.2
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 7.1e-36 156.8 240 41.2
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.5e-33 149.1 145 54.5
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 8.2e-32 143.3 164 49.4
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 2.4e-31 141.7 164 48.8
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 4.5e-30 137.5 267 34.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-29 135.2 451 28.4
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.2e-28 131.3 123 52.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 5.1e-26 124.0 141 47.5
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 5.1e-26 124.0 136 50.0
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 8.7e-26 123.2 205 39.0
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 9.7e-25 119.8 136 48.5
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.7e-24 119.0 136 47.8
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.0e-22 112.1 76 71.1
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 4.2e-20 104.4 254 28.3
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 7.2e-20 103.6 102 55.9
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 2.3e-18 98.6 418 25.6
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 3.3e-17 94.7 437 24.9
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.2e-16 92.0 113 46.9
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 5.0e-13 80.9 123 43.1
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.4e-12 79.3 209 32.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 9.4e-12 76.6 97 43.3
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 6.1e-11 73.9 56 67.9
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 6.1e-11 73.9 58 58.6
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 8.2e-08 63.5 236 25.4
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.4e-07 62.8 117 37.6
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.1e-07 61.2 49 57.1
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 9.1e-07 60.1 56 48.2
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 9.1e-07 60.1 58 46.6
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-06 59.7 151 29.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.6e-06 59.3 47 57.4
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.6e-06 58.5 47 61.7
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 4.5e-06 57.8 86 37.2


User provided reference genes

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