Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1544 Salvia bowleyana HOM05D003160 ORTHO05D010088 2.2e-115 419.1 229 100.0
SalBow3G2702 Salvia bowleyana HOM05D003160 ORTHO05D010088 2.2e-115 419.1 229 100.0
Migut.B01904 Erythranthe guttata HOM05D003160 ORTHO05D010088 1.9e-34 150.2 242 43.0
PGSC0003DMG400007007 Solanum tuberosum HOM05D003160 ORTHO05D010088 1.4e-32 144.1 234 40.6
CANSAT56G1121 Cannabis sativa HOM05D003160 ORTHO05D010088 5.8e-31 138.7 232 42.2
TAR374G0774 Trochodendron aralioides HOM05D003160 ORTHO05D010088 8.3e-30 134.8 233 42.1
CAN.G360.9 Capsicum annuum HOM05D003160 ORTHO05D010088 1.6e-28 130.6 238 36.6
QL08p046209 Quercus lobata HOM05D003160 ORTHO05D010088 3.5e-28 129.4 239 37.2
QL08p046215 Quercus lobata HOM05D003160 ORTHO05D010088 3.5e-28 129.4 239 37.2
Sopen05g028910 Solanum pennellii HOM05D003160 ORTHO05D010088 7.8e-28 128.3 238 37.0
QL08p046202 Quercus lobata HOM05D003160 ORTHO05D010088 1.3e-27 127.5 239 36.8
Duzib138G0284 Durio zibethinus HOM05D003160 ORTHO05D010088 1.7e-27 127.1 239 36.4
Atru.chr5.726 Acer truncatum HOM05D003160 ORTHO05D010088 8.6e-27 124.8 173 41.6
Nn1g00361 Nelumbo nucifera HOM05D000716 ORTHO05D004822 1.9e-26 123.6 230 37.8
PSO384G0028 Papaver somniferum HOM05D003160 ORTHO05D010088 5.6e-26 122.1 250 38.8
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 7.3e-26 121.7 245 37.1
Solyc05g050500.1 Solanum lycopersicum HOM05D003160 ORTHO05D010088 2.1e-25 120.2 232 35.8
Potri.014G102100 Populus trichocarpa HOM05D003160 ORTHO05D010088 3.6e-25 119.4 240 35.8
Manes.05G019500 Manihot esculenta HOM05D003160 ORTHO05D010088 6.2e-25 118.6 230 36.1
Ciclev10021230m.g Citrus clementina HOM05D003160 ORTHO05D010088 1.4e-24 117.5 237 37.6
Thecc.01G337400 Theobroma cacao HOM05D003160 ORTHO05D010088 1.4e-24 117.5 238 33.6
Aqoxy7G00032 Aquilegia oxysepala HOM05D003160 ORTHO05D010088 4.0e-24 115.9 248 33.1
ClCG05G000620 Citrullus lanatus HOM05D001628 ORTHO05D001568 6.8e-24 115.2 224 37.1
Nitab4.5_0003865g0070 Nicotiana tabacum HOM05D003160 ORTHO05D010088 1.2e-23 114.4 234 37.2
SGA_v2.0_scaffold5G03046 Striga asiatica HOM05D003160 ORTHO05D010088 2.0e-23 113.6 167 43.1
MBI12_g03929_MAGBIO Magnolia biondii HOM05D002361 ORTHO05D002843 4.4e-23 112.5 194 39.7
CANSAT56G3603 Cannabis sativa HOM05D003160 ORTHO05D010088 5.8e-23 112.1 231 35.9
MELO3C006001.2 Cucumis melo HOM05D003160 ORTHO05D010088 5.8e-23 112.1 233 36.1
CsaV3_3G007840 Cucumis sativus L. HOM05D000126 ORTHO05D003017 5.8e-23 112.1 162 41.4
Sabra14G0075100 Salix brachista HOM05D003160 ORTHO05D010088 9.9e-23 111.3 237 33.8
Ca_09526_v3 Cicer arietinum L. HOM05D003160 ORTHO05D010088 2.9e-22 109.8 246 32.9
Gohir.D12G117600 Gossypium hirsutum HOM05D003160 ORTHO05D010088 1.1e-21 107.8 193 36.3
Gohir.A12G114100 Gossypium hirsutum HOM05D003160 ORTHO05D010088 3.2e-21 106.3 237 34.6
TWI59G0107 Tripterygium wilfordii HOM05D003160 ORTHO05D010088 5.4e-21 105.5 243 33.7
Medtr7g117900 Medicago truncatula HOM05D003160 ORTHO05D010088 1.6e-20 104.0 234 32.9
Gorai.008G127400 Gossypium raimondii HOM05D003160 ORTHO05D010088 2.7e-20 103.2 237 33.3
TPR.G4697 Trifolium pratense HOM05D003160 ORTHO05D010088 6.0e-20 102.1 240 33.3
Lalb_Chr15g0076361 Lupinus albus HOM05D003160 ORTHO05D010088 7.8e-20 101.7 233 33.9
Prupe.2G193500 Prunus persica HOM05D003160 ORTHO05D010088 1.7e-19 100.5 194 34.0
Lj1g0008335 Lotus japonicus HOM05D003160 ORTHO05D010088 5.1e-19 99.0 247 31.2
Dinv34236 Davidia involucrata HOM05D003160 ORTHO05D010088 1.9e-18 97.1 195 36.4
FvH4_7g17180 Fragaria vesca HOM05D003160 ORTHO05D010088 1.9e-18 97.1 184 37.0
RcHm_v2.0_Chr1g0360571 Rosa chinensis HOM05D003160 ORTHO05D010088 1.9e-18 97.1 184 35.3
FAN06G3527 Fragaria x ananassa HOM05D003160 ORTHO05D010088 3.3e-18 96.3 184 37.0
FAN01G1829 Fragaria x ananassa HOM05D003160 ORTHO05D010088 7.3e-18 95.1 184 36.4
MD01G1085700 Malus domestica HOM05D003160 ORTHO05D010088 1.2e-17 94.4 206 34.5
Lj7P497T13 Lonicera japonica HOM05D010811 ORTHO05D010088 1.6e-17 94.0 194 37.6
Sed0027763 Sechium edule HOM05D003160 ORTHO05D010088 2.1e-17 93.6 237 35.9
FAN03G1832 Fragaria x ananassa HOM05D003160 ORTHO05D010088 8.1e-17 91.7 184 35.9
Glyma.19G257900 Glycine max HOM05D003160 ORTHO05D010088 8.1e-17 91.7 240 33.3
Psat3g001520 Pisum sativum HOM05D003160 ORTHO05D010088 1.8e-16 90.5 144 36.8
ECA236G4264 Erigeron canadensis HOM05D003160 ORTHO05D010088 3.1e-16 89.7 141 37.6
Eucgr.E00026 Eucalyptus grandis HOM05D003160 ORTHO05D010088 1.5e-15 87.4 157 38.2
VMungo0540G0853 Vigna mungo HOM05D003160 ORTHO05D010088 3.4e-15 86.3 234 31.6
Phvul.006G115400 Phaseolus vulgaris HOM05D003160 ORTHO05D010088 4.4e-15 85.9 238 33.6
Cpa.g.sc96.69 Carica papaya HOM05D010811 ORTHO05D010088 1.3e-14 84.3 182 33.0
Sc23g0001970 Simmondsia chinensis HOM05D003160 ORTHO05D010088 2.9e-14 83.2 185 35.7
arahy.Tifrunner.gnm1.ann1.0W8RKK Arachis hypogaea HOM05D010811 ORTHO05D010088 4.9e-14 82.4 198 32.3
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 1.1e-13 81.3 151 25.8
Nitab4.5_0000258g0330 Nicotiana tabacum HOM05D003160 ORTHO05D010088 1.9e-13 80.5 234 31.6
arahy.Tifrunner.gnm1.ann1.ZR3V1T Arachis hypogaea HOM05D010811 ORTHO05D010088 2.4e-13 80.1 198 31.8
Gohir.D01G028200 Gossypium hirsutum HOM05D003160 ORTHO05D005967 2.4e-13 80.1 154 26.6
Gorai.002G037600 Gossypium raimondii HOM05D003160 ORTHO05D005967 2.4e-13 80.1 154 26.6
QL10p002938 Quercus lobata HOM05D003160 ORTHO05D005967 3.2e-13 79.7 144 27.1
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 7.1e-13 78.6 173 29.5
Gohir.A01G040600 Gossypium hirsutum HOM05D003160 ORTHO05D005967 1.2e-12 77.8 154 26.0
Pp3c24_12520 Physcomitrium patens HOM05D003160 ORTHO05D005967 4.6e-12 75.9 145 28.3
Duzib213G0606 Durio zibethinus HOM05D003160 ORTHO05D005967 7.8e-12 75.1 167 24.6
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 7.8e-12 75.1 143 25.2
COL.COLO4_17389 Corchorus olitorius HOM05D003160 ORTHO05D005967 1.3e-11 74.3 154 22.1
Manes.02G188100 Manihot esculenta HOM05D003160 ORTHO05D005967 1.3e-11 74.3 154 25.3
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 1.7e-11 73.9 144 25.7
CiPaw.11G007300 Carya illinoinensis HOM05D003160 ORTHO05D005967 3.0e-11 73.2 144 24.3
unitig_37.g13119 Utricularia gibba HOM05D003160 ORTHO05D005967 3.0e-11 73.2 144 27.8
Ca_26100_v3 Cicer arietinum L. HOM05D003160 ORTHO05D005967 3.9e-11 72.8 152 25.0
Atru.chr13.1881 Acer truncatum HOM05D003160 ORTHO05D005967 5.1e-11 72.4 144 25.0
Cfa018797 Carpinus fangiana HOM05D003160 ORTHO05D005967 6.6e-11 72.0 201 24.9
Sed0001592 Sechium edule HOM05D003160 ORTHO05D010088 6.6e-11 72.0 235 31.1
AagrBONN_evm.TU.Sc2ySwM_362.1478 Anthoceros agrestis HOM05D003160 ORTHO05D005967 8.7e-11 71.6 147 25.9
BcaB01g02780 Brassica carinata HOM05D003160 ORTHO05D005967 8.7e-11 71.6 144 24.3
Eucgr.F04149 Eucalyptus grandis HOM05D003160 ORTHO05D005967 8.7e-11 71.6 144 26.4
Hma1.2p1_0276F.1_g111290 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 8.7e-11 71.6 154 24.7
Sabra13G0099100 Salix brachista HOM05D003160 ORTHO05D005967 8.7e-11 71.6 147 29.3
A03p28680 Brassica napus HOM05D003160 ORTHO05D005967 1.1e-10 71.2 144 24.3
BraA03t12067Z Brassica rapa HOM05D003160 ORTHO05D005967 1.1e-10 71.2 144 24.3
DCAR_002990 Daucus carota HOM05D003160 ORTHO05D000125 1.1e-10 71.2 88 37.5
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 1.1e-10 71.2 194 22.2
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 1.1e-10 71.2 159 25.2
SEGI_07127 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 1.1e-10 71.2 149 24.8
THA.LOC104806778 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 1.1e-10 71.2 143 23.8
Thecc.07G148800 Theobroma cacao HOM05D003160 ORTHO05D005967 1.1e-10 71.2 154 21.4
CDE02G4562 Ceratophyllum demersum HOM05D003160 ORTHO05D005967 1.5e-10 70.9 193 23.3
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 1.5e-10 70.9 199 25.1
Potri.013G117000 Populus trichocarpa HOM05D003160 ORTHO05D005967 1.5e-10 70.9 154 25.3
BcaC01g04706 Brassica carinata HOM05D003160 ORTHO05D005967 1.9e-10 70.5 144 24.3
C03p34700 Brassica napus HOM05D003160 ORTHO05D005967 1.9e-10 70.5 144 24.3
BolC3t15780H Brassica oleracea HOM05D003160 ORTHO05D005967 1.9e-10 70.5 144 24.3
CARHR260570 Cardamine hirsuta HOM05D003160 ORTHO05D005967 1.9e-10 70.5 144 23.6
Aa31LG9G14960 Aethionema arabicum HOM05D003160 ORTHO05D005967 3.3e-10 69.7 144 23.6
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 3.3e-10 69.7 147 24.5
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 4.3e-10 69.3 147 23.1
A09p29470 Brassica napus HOM05D003160 ORTHO05D005967 5.6e-10 68.9 177 22.0
BraA09t38512Z Brassica rapa HOM05D003160 ORTHO05D005967 5.6e-10 68.9 177 22.0
ATR0605G225 Amborella trichopoda HOM05D003160 ORTHO05D005967 7.3e-10 68.6 148 23.0
CANSAT25G2288 Cannabis sativa HOM05D003160 ORTHO05D005967 7.3e-10 68.6 168 23.2
CiPaw.12G043000 Carya illinoinensis HOM05D003160 ORTHO05D005967 7.3e-10 68.6 143 25.2
AL6G43270 Arabidopsis lyrata HOM05D003160 ORTHO05D005967 9.6e-10 68.2 147 21.8
MSTRG.22135 Avicennia marina HOM05D003160 ORTHO05D005967 9.6e-10 68.2 195 22.1
BcaC04g20948 Brassica carinata HOM05D003160 ORTHO05D005967 9.6e-10 68.2 176 22.7
Ciclev10002351m.g Citrus clementina HOM05D003160 ORTHO05D005967 1.3e-09 67.8 196 22.4
SalBow7G2604 Salvia bowleyana HOM05D003160 ORTHO05D005967 1.6e-09 67.4 149 25.5
ECA236G3190 Erigeron canadensis HOM05D000669 ORTHO05D000679 2.1e-09 67.0 84 40.5
MD10G1043200 Malus domestica HOM05D003160 ORTHO05D005967 2.1e-09 67.0 201 21.9
MSTRG.24477 Avicennia marina HOM05D003160 ORTHO05D005967 2.8e-09 66.6 144 24.3
C09p37610 Brassica napus HOM05D003160 ORTHO05D005967 2.8e-09 66.6 177 21.5
BolC9t56592H Brassica oleracea HOM05D003160 ORTHO05D005967 2.8e-09 66.6 177 21.5
Carub.0006s2810 Capsella rubella HOM05D003160 ORTHO05D005967 2.8e-09 66.6 147 21.8
Sed0027822 Sechium edule HOM05D003160 ORTHO05D010088 2.8e-09 66.6 94 42.6
Thhalv10028838m.g Eutrema salsugineum HOM05D003160 ORTHO05D005967 3.6e-09 66.2 177 20.9
SEGI_11516 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 3.6e-09 66.2 229 21.8
RcHm_v2.0_Chr6g0272941 Rosa chinensis HOM05D003160 ORTHO05D005967 4.8e-09 65.9 147 23.8
Haze_07136 Corylus avellana HOM05D003160 ORTHO05D005967 6.2e-09 65.5 192 22.4
HanXRQChr02g0043721 Helianthus annuus HOM05D003160 ORTHO05D005967 6.2e-09 65.5 152 24.3
CSS0043683 Camellia sinensis var. sinensis HOM05D003160 ORTHO05D005967 8.1e-09 65.1 154 22.7
Mapoly0006s0050 Marchantia polymorpha HOM05D003160 ORTHO05D005967 8.1e-09 65.1 145 26.9
AT4G09650 Arabidopsis thaliana HOM05D003160 ORTHO05D005967 1.1e-08 64.7 145 21.4
Dinv13072 Davidia involucrata HOM05D003160 ORTHO05D005967 1.1e-08 64.7 212 22.6
PGR102G2401 Punica granatum HOM05D003160 ORTHO05D005967 1.1e-08 64.7 223 21.5
Pp3c23_6060 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.4e-08 64.3 215 24.2
Rhsim07G0198600 Rhododendron simsii HOM05D003160 ORTHO05D005967 1.4e-08 64.3 147 23.8
Sp6g07950 Schrenkiella parvula HOM05D003160 ORTHO05D005967 1.4e-08 64.3 177 20.3
Lalb_Chr07g0183411 Lupinus albus HOM05D003160 ORTHO05D005967 1.8e-08 63.9 147 21.8
Mapoly0173s0013 Marchantia polymorpha HOM05D003160 ORTHO05D005967 2.4e-08 63.5 176 26.1
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 2.4e-08 63.5 154 22.1
Lsat_1_v5_gn_1_4801 Lactuca sativa HOM05D003160 ORTHO05D005967 3.1e-08 63.2 152 23.0
CARHR249440 Cardamine hirsuta HOM05D010811 ORTHO05D010088 5.3e-08 62.4 205 28.8
AUR62005671 Chenopodium quinoa HOM05D003160 ORTHO05D005967 5.3e-08 62.4 198 23.7
HanXRQChr10g0278581 Helianthus annuus HOM05D003160 ORTHO05D005967 5.3e-08 62.4 147 22.4
AUR62028884 Chenopodium quinoa HOM05D003160 ORTHO05D005967 6.9e-08 62.0 198 23.7
Medtr4g103330 Medicago truncatula HOM05D003160 ORTHO05D005967 6.9e-08 62.0 200 23.5
Aa31LG5G1040 Aethionema arabicum HOM05D010811 ORTHO05D010088 9.0e-08 61.6 198 28.8
Lj4A710G52 Lonicera japonica HOM05D003160 ORTHO05D005967 9.0e-08 61.6 149 20.1
EL10Ac6g13555 Beta vulgaris HOM05D003160 ORTHO05D005967 1.2e-07 61.2 144 23.6
THA.LOC104801361 Tarenaya hassleriana HOM05D010811 ORTHO05D010088 2.0e-07 60.5 138 34.8
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 2.0e-07 60.5 208 23.1
HPP92_004308 Vanilla planifolia HOM05D003160 ORTHO05D005967 2.0e-07 60.5 201 22.4
BcaB05g23969 Brassica carinata HOM05D010811 ORTHO05D010088 3.4e-07 59.7 191 29.3
TWI34G0437 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 3.4e-07 59.7 141 22.7
Ah.05g179250 Amaranthus hybridus HOM05D003160 ORTHO05D010088 4.4e-07 59.3 100 38.0
TAR625G0523 Trochodendron aralioides HOM05D003160 ORTHO05D005967 7.6e-07 58.5 147 21.8
FAN06G5059 Fragaria x ananassa HOM05D003160 ORTHO05D010088 9.9e-07 58.2 58 48.3
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 1.7e-06 57.4 192 20.8
Sp6g01230 Schrenkiella parvula HOM05D010811 ORTHO05D010088 6.4e-06 55.5 195 30.3
GSVIVG01001595001 Vitis vinifera HOM05D003160 ORTHO05D005967 6.4e-06 55.5 156 19.9
HPP92_022428 Vanilla planifolia HOM05D003160 ORTHO05D010088 8.4e-06 55.1 163 26.4


User provided reference genes

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