Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.0e-232 809.7 412 100.0
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.5e-204 714.9 412 86.7
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 6.0e-204 714.1 410 87.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 7.6e-199 697.2 413 85.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 3.2e-197 691.8 445 80.0
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 9.3e-197 690.3 410 83.4
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.7e-195 686.0 412 82.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.9e-194 682.6 412 81.1
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.5e-194 682.2 414 82.1
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 3.3e-194 681.8 410 80.7
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.6e-193 679.5 414 81.9
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.1e-193 679.1 413 82.3
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 8.1e-193 677.2 411 82.0
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 8.1e-193 677.2 412 81.8
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.1e-192 676.8 412 80.8
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.8e-192 676.0 410 80.5
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 3.1e-192 675.2 410 80.7
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 9.0e-192 673.7 412 80.6
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 1.2e-191 673.3 413 81.8
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 2.6e-191 672.2 412 80.3
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 4.4e-191 671.4 413 79.4
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.7e-190 669.5 412 78.9
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 2.2e-190 669.1 412 78.9
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.9e-190 668.7 412 78.6
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 4.9e-190 667.9 410 79.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.1e-189 666.8 412 78.4
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.1e-189 666.8 413 81.6
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.9e-189 666.0 412 78.4
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.2e-189 664.8 410 79.3
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 7.1e-189 664.1 455 74.5
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 7.1e-189 664.1 413 79.7
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.2e-188 663.3 413 78.5
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.1e-188 662.5 411 78.8
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 6.0e-188 661.0 410 79.0
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 7.8e-188 660.6 412 77.7
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.1e-187 657.9 412 78.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 6.6e-187 657.5 412 77.9
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 6.6e-187 657.5 410 78.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 4.3e-186 654.8 410 79.0
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.6e-185 652.9 410 77.8
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 2.1e-185 652.5 411 80.8
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 8.1e-185 650.6 411 78.8
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 8.1e-185 650.6 412 76.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.8e-184 649.4 411 77.9
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.8e-184 649.4 410 78.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.4e-184 649.0 411 78.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 2.4e-184 649.0 410 77.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.4e-184 649.0 479 70.8
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 4.0e-184 648.3 411 77.6
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 6.9e-184 647.5 412 76.7
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.5e-183 646.4 412 76.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.7e-182 642.9 412 76.5
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 2.2e-182 642.5 412 76.9
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 4.9e-182 641.3 412 76.5
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.9e-182 641.3 409 76.5
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 6.4e-182 641.0 414 76.8
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.1e-181 640.2 410 76.1
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.4e-181 639.8 414 77.3
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.9e-181 639.4 413 76.5
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.9e-181 639.4 414 76.8
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.4e-181 639.0 414 77.1
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.2e-180 636.7 413 77.7
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.6e-180 636.3 411 76.6
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.1e-180 636.0 413 77.7
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 3.5e-180 635.2 409 75.8
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.3e-179 633.3 413 78.0
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.8e-179 632.9 415 75.2
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.3e-179 632.5 414 75.4
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.1e-178 630.2 413 76.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 5.6e-178 627.9 375 82.4
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 6.2e-177 624.4 408 76.0
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 6.2e-177 624.4 408 74.8
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 4.0e-176 621.7 410 73.4
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.4e-175 618.6 412 73.1
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 7.6e-175 617.5 416 73.8
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 8.4e-174 614.0 508 65.2
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.2e-173 612.1 414 73.4
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 7.1e-173 610.9 410 73.9
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 7.1e-173 610.9 413 73.1
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.5e-172 608.6 411 72.0
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.0e-172 607.8 413 73.1
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.0e-171 607.1 417 72.4
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.0e-171 607.1 410 73.7
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.3e-171 606.7 410 72.7
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-171 606.7 411 71.8
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.3e-171 606.7 414 72.5
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.3e-171 606.7 413 72.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.3e-171 605.9 411 72.7
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.9e-171 605.1 413 72.2
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.9e-171 605.1 413 72.2
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.1e-171 604.7 410 72.7
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 8.7e-171 604.0 410 72.2
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.7e-171 604.0 413 72.2
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 8.7e-171 604.0 413 71.4
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.1e-170 603.6 412 70.9
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.5e-170 603.2 410 72.7
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.9e-170 602.8 411 71.3
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-170 602.4 414 72.5
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.3e-169 600.1 412 71.6
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.6e-169 599.7 410 71.0
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.6e-169 599.7 410 71.0
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.6e-169 599.7 410 71.0
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.8e-169 599.0 410 71.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.8e-169 599.0 412 70.6
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.8e-169 598.2 409 71.1
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 8.2e-169 597.4 410 71.5
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.4e-168 595.9 417 71.9
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.1e-168 595.5 410 70.7
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 9.0e-168 594.0 410 70.5
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.5e-167 593.2 420 73.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.7e-166 589.7 410 71.0
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.9e-166 589.0 403 74.9
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.5e-162 576.6 466 63.9
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 8.8e-155 550.8 429 64.3
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.0e-154 549.7 418 66.3
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.5e-154 549.3 409 66.7
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 7.7e-151 537.7 350 76.3
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 4.7e-148 528.5 409 64.1
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 5.1e-147 525.0 306 83.3
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.0e-142 510.8 410 60.7
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 4.2e-141 505.4 332 75.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.8e-139 500.0 348 72.7
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.5e-138 496.9 409 60.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 4.5e-135 485.3 329 72.6
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 8.3e-129 464.5 334 71.0
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.1e-128 464.2 419 58.7
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 4.5e-127 458.8 418 58.9
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 3.8e-126 455.7 418 58.6
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.2e-106 391.0 234 80.3
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 8.6e-102 374.8 243 74.9
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 3.5e-87 326.2 431 44.5
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 7.6e-74 282.0 178 77.0
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 1.1e-72 278.1 394 44.7
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.1e-67 261.5 239 58.2
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 6.0e-63 245.7 326 43.9
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.3e-53 213.0 188 62.8
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.7e-49 201.1 256 49.2
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 8.5e-49 198.7 113 86.7
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.0e-38 165.2 219 44.7
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.8e-36 157.1 125 60.8
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.8e-30 137.9 80 82.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 3.0e-30 137.1 107 64.5
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 6.3e-28 129.4 84 73.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.9e-25 120.6 90 64.4
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 6.5e-25 119.4 183 43.2
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.4e-22 111.7 83 65.1
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 2.3e-22 110.9 107 56.1
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 2.3e-22 110.9 107 56.1
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 3.3e-21 107.1 74 66.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 3.3e-21 107.1 74 66.2
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 2.2e-20 104.4 74 64.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 4.8e-20 103.2 86 62.8
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 4.1e-19 100.1 73 67.1
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 7.7e-18 95.9 81 58.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.1e-15 87.8 66 59.1
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.8e-14 84.7 59 69.5
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.3e-12 78.6 65 53.8
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.6e-10 71.6 90 45.6
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 2.9e-09 67.4 112 39.3
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 3.8e-09 67.0 112 38.4


User provided reference genes

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