Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 2.1e-305 1051.6 536 100.0
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 2.0e-167 593.2 576 58.9
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.3e-161 573.9 555 59.1
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 2.2e-158 563.1 535 60.2
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 1.8e-155 553.5 598 54.8
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 2.9e-142 509.6 495 57.8
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 3.8e-142 509.2 483 57.6
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.7e-134 483.8 485 54.8
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 1.7e-134 483.8 473 58.8
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 8.8e-131 471.5 490 55.1
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 5.7e-130 468.8 538 51.5
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 7.4e-130 468.4 570 49.8
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 1.8e-128 463.8 488 53.5
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 2.4e-128 463.4 481 54.5
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 2.4e-128 463.4 472 55.1
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 1.7e-126 457.2 490 51.6
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 1.5e-125 454.1 563 49.9
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 1.5e-125 454.1 586 48.0
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 5.5e-125 452.2 490 53.1
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 9.4e-125 451.4 496 54.0
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 1.6e-124 450.7 480 53.1
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 2.1e-124 450.3 553 50.1
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 2.7e-124 449.9 480 52.9
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 3.6e-124 449.5 571 49.0
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 8.0e-124 448.4 474 54.0
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 1.8e-123 447.2 501 52.1
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 5.2e-123 445.7 559 48.7
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 2.6e-122 443.4 488 52.5
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 3.7e-121 439.5 546 48.9
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 1.4e-120 437.6 490 51.8
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 4.1e-120 436.0 468 53.2
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 7.0e-120 435.3 582 47.6
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 2.0e-119 433.7 485 51.8
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 2.7e-119 433.3 465 53.1
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 2.7e-119 433.3 489 51.5
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 3.5e-119 433.0 480 51.9
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 4.5e-119 432.6 534 50.0
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 7.7e-119 431.8 547 48.1
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 2.2e-118 430.3 574 47.2
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 3.8e-118 429.5 543 48.3
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 8.5e-118 428.3 482 52.5
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 2.5e-117 426.8 482 52.5
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 5.5e-117 425.6 557 48.1
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 9.4e-117 424.9 474 51.3
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 1.6e-116 424.1 502 49.8
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 8.0e-116 421.8 467 53.5
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 1.0e-115 421.4 554 48.6
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 6.8e-115 418.7 538 46.8
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 8.8e-115 418.3 554 48.2
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 1.5e-114 417.5 511 50.1
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 2.6e-114 416.8 469 51.6
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 5.7e-114 415.6 614 45.6
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 9.8e-114 414.8 502 49.2
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 1.3e-113 414.5 552 48.2
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 1.1e-112 411.4 470 51.9
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 1.8e-112 410.6 465 52.3
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 2.4e-112 410.2 483 51.6
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 2.4e-112 410.2 486 49.8
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 3.1e-112 409.8 536 47.6
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 7.7e-111 405.2 462 50.4
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 2.9e-110 403.3 464 50.0
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 5.0e-110 402.5 507 46.9
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 1.1e-109 401.4 461 50.5
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 5.5e-109 399.1 479 47.8
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 1.6e-108 397.5 549 44.1
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 2.8e-108 396.7 476 49.8
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 4.4e-106 389.4 473 48.2
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.3e-105 387.9 563 45.6
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 7.0e-104 382.1 538 45.4
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 1.2e-103 381.3 499 46.3
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 1.2e-103 381.3 466 48.7
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 2.0e-103 380.6 486 47.1
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 5.9e-103 379.0 517 45.6
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 5.9e-103 379.0 475 50.1
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 5.9e-103 379.0 475 49.7
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 7.8e-103 378.6 564 45.0
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 7.8e-103 378.6 473 49.7
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 7.8e-103 378.6 487 47.2
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 5.6e-101 372.5 500 49.0
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 9.5e-101 371.7 478 48.3
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 6.8e-99 365.5 486 46.5
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 4.4e-98 362.8 486 46.3
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 3.2e-96 356.7 482 45.9
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 9.2e-96 355.1 482 48.5
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 1.0e-94 351.7 482 45.4
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 3.9e-94 349.7 479 45.5
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 8.6e-94 348.6 583 41.7
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 1.1e-93 348.2 407 48.9
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 3.1e-91 340.1 447 45.9
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 7.5e-82 308.9 470 44.5
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 3.7e-81 306.6 558 38.2
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 3.7e-81 306.6 552 38.9
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 3.7e-81 306.6 552 38.9
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 1.6e-76 291.2 371 47.4
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 4.7e-76 289.7 480 45.0
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 2.5e-69 267.3 594 37.0
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 7.8e-63 245.7 275 52.4
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 1.1e-61 241.9 294 48.3
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 7.6e-58 229.2 247 53.4
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 7.9e-47 192.6 227 48.9
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 1.3e-46 191.8 366 38.0
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 3.9e-46 190.3 351 40.2
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 6.7e-46 189.5 283 42.4
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 2.6e-42 177.6 155 63.2
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.1e-40 172.2 268 42.9
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 9.7e-37 159.1 157 58.0
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 6.5e-33 146.4 417 30.2
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 1.9e-32 144.8 98 75.5
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 3.0e-30 137.5 199 41.7
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 3.9e-30 137.1 82 89.0
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 8.8e-30 136.0 126 63.5
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.1e-27 129.0 170 48.2
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 2.5e-24 117.9 162 46.9
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 1.2e-23 115.5 157 47.8
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 5.7e-21 106.7 95 63.2
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 1.1e-16 92.4 179 33.0
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 6.1e-15 86.7 349 27.2
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.1e-13 82.4 95 51.6
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 2.8e-12 77.8 334 25.7
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 1.4e-11 75.5 161 37.3
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 3.1e-11 74.3 50 76.0


User provided reference genes

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