Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1258.0 635 100.0
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 635 93.5
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1179.5 635 93.1
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 632 92.1
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1172.1 632 91.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 633 92.3
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 633 92.3
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 633 91.9
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 633 91.8
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 633 92.1
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 635 92.4
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 633 91.5
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 633 91.9
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 633 91.2
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 632 91.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 633 91.5
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 635 91.3
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 633 90.8
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1164.8 635 91.0
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1164.8 632 91.8
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 633 91.9
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 633 91.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 633 91.5
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1161.4 633 91.2
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 633 90.5
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 630 91.3
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 633 91.9
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 633 91.2
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 635 91.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 633 90.8
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 633 90.8
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 627 91.9
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 633 90.7
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 630 90.0
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 635 90.4
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 635 90.4
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 633 90.0
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 633 90.2
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 630 90.3
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 630 91.1
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 643 89.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 635 89.9
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 633 90.8
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 635 89.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 633 90.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 630 89.5
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 633 90.5
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 627 90.6
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 632 90.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 635 89.3
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 632 89.7
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 632 90.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 629 90.8
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 630 90.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 633 90.2
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 632 90.2
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 629 90.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 633 90.2
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 632 88.9
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 635 89.3
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 632 89.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 632 89.7
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 633 90.2
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 632 89.4
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 633 89.3
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 633 89.7
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 633 89.4
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 633 89.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 633 89.3
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 632 89.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 632 89.4
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 632 88.6
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 633 89.1
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 632 88.9
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 632 88.9
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 632 88.9
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 633 88.8
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 632 88.9
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 660 86.2
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 633 88.8
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 632 88.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 635 87.1
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 632 87.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 632 88.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 632 87.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 635 86.6
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 632 89.6
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 633 88.8
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 635 86.9
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 635 88.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 628 90.0
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1114.4 630 87.6
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1107.0 632 86.6
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1105.5 632 86.6
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1104.7 633 86.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1102.4 635 85.5
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1100.5 632 85.8
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1084.7 628 85.0
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1083.9 628 84.7
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1076.6 628 83.6
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 4.3e-312 1073.5 643 84.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.8e-308 1062.0 582 90.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.1e-300 1036.2 630 80.3
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 4.8e-293 1010.7 635 78.7
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.1e-285 985.3 534 91.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.0e-283 978.8 534 90.3
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.7e-282 975.7 537 90.5
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 7.9e-272 940.3 648 73.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.0e-267 925.6 630 74.8
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.0e-263 913.3 648 72.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.8e-263 912.5 495 91.3
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.1e-262 909.8 629 72.0
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 2.6e-251 872.1 635 74.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.6e-246 855.5 503 86.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.4e-244 849.7 503 85.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 3.0e-239 832.0 633 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.7e-234 816.2 499 81.2
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 7.2e-233 810.8 638 65.0
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.7e-221 773.1 642 61.2
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 3.1e-207 725.7 444 83.8
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.3e-193 679.1 535 68.8
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.7e-181 640.2 641 52.9
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.0e-178 630.9 443 75.6
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.8e-176 622.9 354 88.7
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.5e-164 583.2 407 74.2
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.2e-158 564.3 311 90.4
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 6.7e-146 521.9 291 88.0
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.7e-139 500.0 273 91.2
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 6.6e-117 425.6 527 43.8
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.6e-97 360.5 197 89.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.5e-86 323.6 236 69.5
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.4e-82 311.6 231 70.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.9e-82 308.9 181 84.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 4.7e-75 286.6 162 85.2
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.6e-73 279.3 633 34.3
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 4.9e-72 276.6 163 83.4
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 8.1e-59 232.6 273 49.5
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.9e-52 211.5 230 54.3
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 3.3e-44 184.1 101 89.1
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.5e-39 167.9 99 82.8
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 7.2e-39 166.4 104 75.0
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.6e-38 164.1 101 79.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 2.5e-36 157.9 90 86.7
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 4.3e-36 157.1 157 58.6
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.7e-35 154.1 86 83.7
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.1e-34 152.5 127 64.6
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 6.9e-34 149.8 91 82.4
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.2e-33 149.1 91 81.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.5e-31 141.4 74 87.8
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.3e-21 108.2 59 86.4
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 3.9e-21 107.5 116 53.4
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.0e-20 105.1 53 96.2
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.8e-18 98.6 60 80.0
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.0e-16 92.8 63 69.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 2.9e-16 91.3 51 82.4
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 7.2e-15 86.7 49 79.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.4e-10 72.4 56 60.7
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.7e-09 68.2 43 74.4


User provided reference genes

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