Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1895 Salvia bowleyana HOM05D001996 ORTHO05D026115 8.0e-62 240.4 130 100.0
SalBow2G2867 Salvia bowleyana HOM05D001996 ORTHO05D026115 8.0e-62 240.4 130 100.0
SalBow2G0107 Salvia bowleyana HOM05D001996 ORTHO05D026115 5.6e-47 191.0 105 97.1
SalBow8G0316 Salvia bowleyana HOM05D001996 ORTHO05D026115 2.1e-46 189.1 105 96.2
SalBow3G2746 Salvia bowleyana HOM05D001996 ORTHO05D002072 3.5e-33 145.2 147 59.2
SalBow4G1097 Salvia bowleyana HOM05D001996 ORTHO05D026115 3.9e-32 141.7 73 97.3
SalBow4G2816 Salvia bowleyana HOM05D001996 ORTHO05D002072 2.2e-27 125.9 120 60.8
SalBow6G3115 Salvia bowleyana HOM05D001996 ORTHO05D002072 5.4e-18 94.7 54 85.2
Migut.F00024 Erythranthe guttata HOM05D001996 ORTHO05D002072 3.9e-16 88.6 120 48.3
CAN.G473.81 Capsicum annuum HOM05D001996 ORTHO05D002072 1.2e-12 77.0 62 62.9
GSVIVG01033018001 Vitis vinifera HOM05D001996 ORTHO05D002072 2.0e-12 76.3 76 51.3
Peaxi162Scf00420g00735 Petunia axillaris HOM05D001996 ORTHO05D002072 4.4e-12 75.1 80 48.8
Dinv25626 Davidia involucrata HOM05D001996 ORTHO05D002072 1.3e-11 73.6 74 51.4
Actinidia05868 Actinidia chinensis HOM05D001996 ORTHO05D002072 1.7e-11 73.2 77 46.8
ECA246G2407 Erigeron canadensis HOM05D001996 ORTHO05D002072 1.7e-11 73.2 139 35.3
HanXRQChr15g0475801 Helianthus annuus HOM05D001996 ORTHO05D002072 2.2e-11 72.8 131 37.4
CSS0032729 Camellia sinensis var. sinensis HOM05D001996 ORTHO05D002072 4.9e-11 71.6 77 45.5
Lsat_1_v5_gn_0_11320 Lactuca sativa HOM05D001996 ORTHO05D002072 4.9e-11 71.6 132 37.9
HanXRQChr17g0551571 Helianthus annuus HOM05D001996 ORTHO05D002072 6.4e-11 71.2 132 36.4
PGSC0003DMG400020218 Solanum tuberosum HOM05D001996 ORTHO05D002072 1.1e-10 70.5 121 38.8
Eucgr.H03368 Eucalyptus grandis HOM05D001996 ORTHO05D002072 1.4e-10 70.1 133 35.3
Atru.chr6.2628 Acer truncatum HOM05D001996 ORTHO05D002072 2.4e-10 69.3 77 48.1
MD17G1009700 Malus domestica HOM05D001996 ORTHO05D002072 2.4e-10 69.3 77 46.8
Ciclev10015370m.g Citrus clementina HOM05D001996 ORTHO05D002072 4.2e-10 68.6 75 50.7
Potri.017G062000 Populus trichocarpa HOM05D001996 ORTHO05D002072 4.2e-10 68.6 77 48.1
TWI34G0708 Tripterygium wilfordii HOM05D001996 ORTHO05D002072 4.2e-10 68.6 74 50.0
VMungo1383G0379 Vigna mungo HOM05D001996 ORTHO05D002072 5.4e-10 68.2 77 42.9
Gohir.A07G231000 Gossypium hirsutum HOM05D001996 ORTHO05D002072 7.1e-10 67.8 80 45.0
Gohir.D07G238200 Gossypium hirsutum HOM05D001996 ORTHO05D002072 7.1e-10 67.8 80 45.0
Gorai.001G274000 Gossypium raimondii HOM05D001996 ORTHO05D002072 7.1e-10 67.8 80 45.0
Phvul.001G087500 Phaseolus vulgaris HOM05D001996 ORTHO05D002072 7.1e-10 67.8 77 41.6
Thecc.04G043700 Theobroma cacao HOM05D001996 ORTHO05D002072 7.1e-10 67.8 80 43.8
TWI60G0804 Tripterygium wilfordii HOM05D001996 ORTHO05D002072 1.2e-09 67.0 74 48.6
COL.COLO4_13330 Corchorus olitorius HOM05D001996 ORTHO05D002072 1.6e-09 66.6 77 44.2
Solyc02g093960.3 Solanum lycopersicum HOM05D001996 ORTHO05D002072 1.6e-09 66.6 61 52.5
Duzib147G0925 Durio zibethinus HOM05D001996 ORTHO05D002072 3.5e-09 65.5 80 45.0
PGR083G1912 Punica granatum HOM05D001996 ORTHO05D002072 3.5e-09 65.5 134 35.1
QL02p070193 Quercus lobata HOM05D001996 ORTHO05D002072 3.5e-09 65.5 80 41.2
Sabra16G0206300 Salix brachista HOM05D001996 ORTHO05D002072 3.5e-09 65.5 77 45.5
CiPaw.03G003700 Carya illinoinensis HOM05D001996 ORTHO05D002072 4.6e-09 65.1 80 42.5
Rhsim10G0002600 Rhododendron simsii HOM05D001996 ORTHO05D002072 4.6e-09 65.1 77 44.2
Cfa007184 Carpinus fangiana HOM05D001996 ORTHO05D002072 6.0e-09 64.7 77 45.5
Haze_14925 Corylus avellana HOM05D001996 ORTHO05D002072 6.0e-09 64.7 77 45.5
Sopen02g038610 Solanum pennellii HOM05D001996 ORTHO05D002072 6.0e-09 64.7 62 53.2
Lalb_Chr14g0363831 Lupinus albus HOM05D001996 ORTHO05D002072 7.8e-09 64.3 77 40.3
FAN14G3452 Fragaria x ananassa HOM05D001996 ORTHO05D002072 1.0e-08 63.9 80 42.5
Potri.001G323600 Populus trichocarpa HOM05D001996 ORTHO05D002072 1.0e-08 63.9 77 45.5
RcHm_v2.0_Chr2g0176271 Rosa chinensis HOM05D001996 ORTHO05D002072 1.0e-08 63.9 81 46.9
Sabra17G0056100 Salix brachista HOM05D001996 ORTHO05D002072 1.0e-08 63.9 77 44.2
AUR62041090 Chenopodium quinoa HOM05D001996 ORTHO05D002072 3.0e-08 62.4 80 37.5
FvH4_6g54080 Fragaria vesca HOM05D001996 ORTHO05D002072 3.0e-08 62.4 81 42.0
Manes.11G079200 Manihot esculenta HOM05D001996 ORTHO05D002072 3.0e-08 62.4 80 42.5
FAN02G0478 Fragaria x ananassa HOM05D001996 ORTHO05D002072 5.1e-08 61.6 81 42.0
FAN02G4394 Fragaria x ananassa HOM05D001996 ORTHO05D002072 5.1e-08 61.6 81 42.0
Prupe.3G311400 Prunus persica HOM05D001996 ORTHO05D002072 5.1e-08 61.6 77 42.9
Sed0006320 Sechium edule HOM05D001996 ORTHO05D002072 6.6e-08 61.2 70 45.7
arahy.Tifrunner.gnm1.ann1.0IEW9E Arachis hypogaea HOM05D001996 ORTHO05D002072 8.7e-08 60.8 77 39.0
arahy.Tifrunner.gnm1.ann1.IR4UTH Arachis hypogaea HOM05D001996 ORTHO05D002072 8.7e-08 60.8 77 39.0
TAR622G0095 Trochodendron aralioides HOM05D001996 ORTHO05D002072 8.7e-08 60.8 77 41.6
EL10Ac6g13376 Beta vulgaris HOM05D001996 ORTHO05D002072 1.1e-07 60.5 77 37.7
Ca_08106_v3 Cicer arietinum L. HOM05D001996 ORTHO05D002072 1.5e-07 60.1 77 40.3
MELO3C014936.2 Cucumis melo HOM05D001996 ORTHO05D002072 1.5e-07 60.1 70 45.7
CsaV3_3G026360 Cucumis sativus L. HOM05D001996 ORTHO05D002072 1.5e-07 60.1 70 45.7
Lj1g0022123 Lotus japonicus HOM05D001996 ORTHO05D002072 1.5e-07 60.1 77 37.7
vmacro22235 Vaccinium macrocarpon HOM05D001996 ORTHO05D002072 1.9e-07 59.7 137 34.3
DCAR_014480 Daucus carota HOM05D001996 ORTHO05D002072 2.5e-07 59.3 76 40.8
FAN05G4316 Fragaria x ananassa HOM05D001996 ORTHO05D002072 2.5e-07 59.3 70 47.1
Glyma.16G051000 Glycine max HOM05D001996 ORTHO05D002072 2.5e-07 59.3 77 35.1
Nn3g16335 Nelumbo nucifera HOM05D001996 ORTHO05D002072 2.5e-07 59.3 133 33.1
Aqoxy5G03213 Aquilegia oxysepala HOM05D001996 ORTHO05D002072 3.3e-07 58.9 80 36.2
Glyma.19G099600 Glycine max HOM05D001996 ORTHO05D002072 4.3e-07 58.5 77 36.4
vmacro23369 Vaccinium macrocarpon HOM05D001996 ORTHO05D002072 4.3e-07 58.5 125 36.0
Medtr7g083110 Medicago truncatula HOM05D001996 ORTHO05D002072 7.3e-07 57.8 77 37.7
Manes.04G091001 Manihot esculenta HOM05D001996 ORTHO05D002072 9.6e-07 57.4 77 41.6
Nitab4.5_0003318g0170 Nicotiana tabacum HOM05D001996 ORTHO05D002072 9.6e-07 57.4 40 72.5
TPR.G28464 Trifolium pratense HOM05D001996 ORTHO05D002072 9.6e-07 57.4 77 37.7
AUR62037850 Chenopodium quinoa HOM05D001996 ORTHO05D002072 1.3e-06 57.0 75 36.0
ClCG05G013760 Citrullus lanatus HOM05D001996 ORTHO05D002072 1.3e-06 57.0 70 41.4
DCAR_000945 Daucus carota HOM05D001996 ORTHO05D002072 2.1e-06 56.2 77 41.6
Os11g0514800 Oryza sativa ssp. japonica HOM05D001996 ORTHO05D002072 2.1e-06 56.2 73 42.5
Zm00001eb170190 Zea mays HOM05D001996 ORTHO05D002072 2.8e-06 55.8 73 43.8
Lj7C614T14 Lonicera japonica HOM05D001996 ORTHO05D002072 3.6e-06 55.5 110 32.7
PSO017G2277 Papaver somniferum HOM05D001996 ORTHO05D002072 6.2e-06 54.7 78 37.2
PSO478G0040 Papaver somniferum HOM05D001996 ORTHO05D002072 6.2e-06 54.7 78 37.2
Psat3g096040 Pisum sativum HOM05D001996 ORTHO05D002072 6.2e-06 54.7 74 37.8


User provided reference genes

Program Settings