Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 2234.9 1186 100.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 1667.1 1149 78.2
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 1612.8 1145 76.7
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1489.2 1210 70.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1454.9 1151 69.2
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1441.8 1233 65.9
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 1435.6 1194 68.2
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1417.1 1204 66.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1414.8 1219 67.4
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1412.5 1203 67.3
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1400.6 1231 65.3
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1388.2 1233 65.1
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1387.9 1222 64.5
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1370.5 1206 65.4
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 1370.5 1200 65.8
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1366.7 1208 65.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 1362.8 1198 65.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 1350.1 1230 63.2
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1345.5 1218 63.0
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 1341.6 1235 63.0
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 1333.5 1239 62.6
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1327.4 1212 63.4
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 1327.4 1246 61.0
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 1327.4 1147 64.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1322.8 1198 62.8
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 1319.7 1241 62.1
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1318.5 1220 62.9
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 1314.3 1199 62.5
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 1313.9 1208 62.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 1304.3 1288 59.5
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 1303.1 1193 63.0
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 1302.3 1173 63.5
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 1301.2 1234 61.6
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1299.6 1213 61.7
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1298.5 1227 60.9
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 1295.4 1235 62.7
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 1291.6 1220 61.1
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 1287.3 1220 61.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1284.6 1233 61.6
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 1284.2 1216 60.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 1280.4 1200 61.7
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1280.4 1201 62.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1279.6 1220 60.2
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 1278.1 1225 60.2
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 1273.8 1232 60.3
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 1273.1 1230 60.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1271.9 1220 60.9
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1271.9 1220 60.9
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 1269.2 1164 62.5
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 1266.1 1232 60.2
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 1264.6 1202 61.6
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 1260.7 1220 60.7
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1259.2 1257 60.3
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1259.2 1221 60.0
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1255.0 1217 59.6
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 1252.3 1156 64.0
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 1250.7 1210 61.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1233.4 1215 59.6
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 1229.5 1220 59.8
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1229.2 1205 59.2
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 1228.0 1210 58.5
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1225.3 1218 59.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1209.1 1271 55.9
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 1202.2 1172 61.2
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 1194.1 1207 58.4
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1187.6 1183 59.3
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1184.9 1171 59.9
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1180.2 1181 58.9
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1179.5 1207 59.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1178.3 1170 60.0
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1174.8 1217 57.9
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1171.0 1192 58.1
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1167.1 1188 58.6
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1164.8 1187 57.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1157.1 1184 57.3
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1155.6 1205 56.3
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1134.0 1187 56.9
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1131.3 1184 56.8
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 1131.3 1036 62.1
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1127.1 1184 56.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1120.5 1210 55.8
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1116.3 1184 56.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1113.6 1189 56.8
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1111.3 1209 56.5
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1110.9 1183 57.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1108.2 1187 56.3
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1088.6 1212 55.3
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1082.8 1210 55.3
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1078.2 1154 56.1
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1078.2 1210 55.2
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.0e-310 1067.4 1209 54.8
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 2.4e-306 1055.8 1191 55.1
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 1.2e-292 1010.4 1137 53.8
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.7e-286 988.4 1122 55.0
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 3.1e-285 985.7 1158 52.2
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 7.1e-282 974.5 641 78.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 5.1e-280 968.4 677 74.2
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 1.1e-279 967.2 1106 54.2
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 1.5e-260 903.7 1313 46.6
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 2.9e-259 899.4 1306 46.6
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 1.3e-254 884.0 1159 48.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 8.4e-243 844.7 694 67.6
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 5.0e-227 792.3 1146 44.9
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 8.5e-219 765.0 1167 45.4
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 3.6e-217 759.6 1065 46.2
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.7e-215 752.3 846 54.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.4e-213 747.7 937 52.3
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 4.0e-200 703.0 555 67.6
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 4.3e-186 656.4 698 51.0
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.1e-114 419.1 262 79.8
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 5.0e-110 403.7 564 40.2
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.0e-99 369.4 511 50.5
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.8e-90 336.3 299 61.2
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.5e-74 285.8 175 81.7
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.3e-73 282.7 560 41.2
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.7e-73 282.3 167 85.0
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 3.7e-73 281.2 565 33.8
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 5.0e-70 270.8 171 77.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 6.2e-44 184.1 329 42.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 3.1e-43 181.8 790 26.3
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 7.6e-34 150.6 94 77.7
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.8e-30 139.4 410 27.3
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 5.6e-29 134.4 138 57.2
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 3.4e-26 125.2 75 84.0
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 7.6e-26 124.0 105 65.7
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.3e-25 123.2 125 61.6
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 5.5e-24 117.9 150 50.0
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 9.3e-24 117.1 69 84.1
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.5e-21 109.8 92 59.8
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-16 93.6 58 79.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.1e-16 93.6 58 79.3
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-16 93.6 58 79.3
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 5.5e-16 91.3 51 86.3
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 1.6e-12 79.7 42 85.7
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 6.9e-11 74.3 74 52.7
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.2e-10 73.6 56 60.7
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.5e-10 73.2 53 73.6
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 2.0e-10 72.8 55 67.3
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.6e-10 72.4 79 49.4
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 5.9e-10 71.2 76 51.3
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.1e-08 67.0 103 39.8
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 3.2e-08 65.5 32 87.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 2.1e-07 62.8 32 93.8


User provided reference genes

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