Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 9.6e-190 666.8 360 100.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.3e-122 443.7 360 70.8
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 3.1e-116 422.5 360 65.3
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.6e-115 420.2 334 68.6
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.7e-109 400.2 266 77.8
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.8e-108 396.7 306 71.2
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.3e-105 385.6 332 63.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 4.0e-103 379.0 325 64.3
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.0e-103 379.0 269 74.0
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 4.0e-103 379.0 271 73.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 4.0e-103 379.0 271 73.4
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 8.9e-103 377.9 321 62.9
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.2e-102 377.5 337 62.6
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.2e-102 377.5 284 70.8
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.6e-102 376.3 328 63.1
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.6e-102 376.3 357 60.8
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.6e-102 376.3 298 70.1
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 3.4e-102 375.9 308 64.6
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 3.4e-102 375.9 348 60.9
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.4e-102 375.6 363 60.9
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.8e-102 375.2 297 69.4
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 7.5e-102 374.8 333 63.4
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.5e-102 374.8 266 72.6
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 7.5e-102 374.8 345 64.1
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 9.8e-102 374.4 262 74.0
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-101 373.2 325 61.8
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.9e-101 372.9 363 58.7
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 6.4e-101 371.7 299 63.9
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 6.4e-101 371.7 256 75.4
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 8.3e-101 371.3 321 64.8
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.1e-100 370.9 327 61.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.1e-100 370.9 350 61.7
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.1e-100 370.9 268 72.0
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.9e-100 370.2 270 71.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.4e-100 368.6 296 69.6
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 9.2e-100 367.9 264 71.6
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.2e-99 367.5 349 59.9
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.6e-99 367.1 347 59.9
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.0e-99 366.7 316 63.9
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.7e-99 366.3 352 61.6
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 3.5e-99 365.9 271 69.0
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.6e-99 365.5 262 69.8
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.6e-99 365.5 351 59.3
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 6.0e-99 365.2 269 69.9
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.7e-98 363.6 276 67.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.3e-98 363.2 268 69.8
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.0e-98 362.8 276 69.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.0e-98 362.8 324 60.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 3.0e-98 362.8 320 61.9
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.9e-98 362.5 287 69.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 3.9e-98 362.5 265 70.2
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.0e-98 362.1 270 70.4
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 6.6e-98 361.7 416 54.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.1e-97 360.9 354 56.8
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.1e-97 360.9 364 60.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.9e-97 360.1 269 71.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.9e-97 360.1 298 65.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.3e-97 359.0 269 71.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 7.3e-97 358.2 262 69.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 9.5e-97 357.8 266 69.5
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.1e-96 356.7 266 69.2
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 2.8e-96 356.3 266 69.9
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.7e-96 355.5 269 70.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 6.2e-96 355.1 352 59.4
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-95 354.4 326 61.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.2e-94 350.9 319 62.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.0e-94 350.1 309 62.5
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.6e-94 349.7 265 67.9
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.4e-94 349.4 264 69.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 7.5e-94 348.2 308 61.4
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.7e-93 347.1 386 55.7
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.2e-93 346.7 259 70.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.4e-93 345.1 267 65.2
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 6.4e-93 345.1 310 62.3
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.4e-93 345.1 345 56.5
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 8.3e-93 344.7 266 67.3
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.4e-92 344.0 301 62.8
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.4e-92 344.0 321 60.7
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 3.2e-92 342.8 329 60.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 4.1e-92 342.4 286 65.4
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 7.1e-92 341.7 265 66.8
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 7.1e-92 341.7 299 60.9
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-91 340.9 329 60.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-91 340.9 329 60.8
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 2.1e-91 340.1 348 56.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.7e-91 339.7 319 59.9
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 3.5e-91 339.3 337 57.6
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 6.0e-91 338.6 265 66.8
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.7e-90 337.0 365 55.6
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.3e-90 336.7 303 58.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 8.6e-90 334.7 333 55.3
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 3.4e-86 322.8 306 58.8
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-82 310.1 315 55.6
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 8.6e-82 308.1 325 55.4
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 9.6e-81 304.7 325 54.5
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.6e-80 303.9 328 54.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 4.7e-80 302.4 315 54.6
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 4.6e-75 285.8 290 56.6
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 6.0e-75 285.4 318 54.4
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 7.8e-75 285.0 208 71.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 5.3e-71 272.3 324 52.2
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.1e-68 264.6 296 46.6
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.3e-66 257.7 271 49.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.6e-66 255.4 311 46.0
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 8.7e-66 255.0 283 50.5
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 5.1e-58 229.2 175 66.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.7e-53 214.2 242 45.5
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.5e-51 206.5 189 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.1e-50 202.6 205 51.2
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 8.7e-50 201.8 139 70.5
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-49 200.3 199 55.3
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 7.2e-44 182.2 189 54.5
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 5.1e-42 176.0 151 60.9
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.9e-39 165.6 127 67.7
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.2e-38 164.9 241 46.1
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.5e-38 162.9 184 53.8
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.5e-33 147.9 199 47.7
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.5e-33 147.1 119 66.4
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-32 144.8 109 64.2
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.8e-32 143.7 200 47.0
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.4e-31 140.6 116 62.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 5.0e-29 132.9 109 62.4
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.9e-28 131.0 93 65.6
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.5e-28 130.6 105 67.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.2e-28 130.2 144 50.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.8e-26 122.1 74 81.1
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.1e-23 113.6 70 74.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 5.3e-23 112.8 211 32.2
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 4.5e-22 109.8 92 66.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 4.2e-20 103.2 80 61.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.8e-18 97.8 165 36.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 6.7e-18 95.9 91 57.1
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-14 85.1 92 50.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.6e-14 84.7 56 73.2
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 2.0e-14 84.3 303 27.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.0e-14 84.3 149 32.9
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 2.0e-14 84.3 99 50.5
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.5e-14 83.6 50 78.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.0e-13 82.0 55 74.5
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.2e-13 80.9 147 35.4
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.9e-12 77.8 147 35.4
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 2.7e-11 73.9 139 34.5
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.5e-09 68.2 65 58.5
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.2e-08 64.3 38 71.1
SalBow1G0093 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.7e-08 63.5 54 63.0


User provided reference genes

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