Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.0e-105 386.7 189 100.0
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 8.2e-100 367.1 188 92.6
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.8e-99 365.9 189 92.1
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 4.1e-99 364.8 189 92.1
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 3.8e-97 358.2 189 90.5
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.2e-95 353.2 189 89.4
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.8e-91 339.3 189 86.2
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 9.4e-88 327.0 189 85.7
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.6e-87 325.1 189 84.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 8.0e-87 323.9 189 84.1
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.8e-86 322.8 189 84.1
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.3e-86 322.4 189 84.7
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.3e-86 322.4 189 84.7
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.3e-86 322.4 189 84.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.3e-86 322.4 189 84.1
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 3.0e-86 322.0 189 84.1
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 3.0e-86 322.0 189 84.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 4.0e-86 321.6 189 83.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 8.8e-86 320.5 189 84.1
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 8.8e-86 320.5 189 82.5
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 8.8e-86 320.5 189 82.5
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.6e-85 318.9 189 83.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.6e-85 318.9 189 83.1
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.4e-83 312.4 189 80.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 7.0e-83 310.8 189 79.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 9.1e-83 310.5 189 79.9
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.0e-82 309.3 189 79.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.7e-82 308.9 189 81.0
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 79.4
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 79.9
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 80.4
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 7.7e-82 307.4 181 82.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 79.9
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 79.9
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 79.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.7e-81 306.2 189 79.9
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 2.3e-81 305.8 189 79.9
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.3e-81 305.8 189 79.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 79.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 77.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 80.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 80.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 80.4
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 79.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 79.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 79.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 79.9
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 78.3
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 78.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 79.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 8.6e-81 303.9 189 77.8
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 8.6e-81 303.9 189 80.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.1e-80 303.5 189 77.8
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.1e-80 303.5 189 78.3
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 78.8
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 79.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 79.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 79.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.5e-80 302.4 189 79.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.5e-80 302.4 189 79.9
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 3.3e-80 302.0 189 79.9
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 79.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 79.4
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 78.3
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 78.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 9.5e-80 300.4 189 78.3
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 78.3
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.8e-79 298.9 189 78.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 78.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 77.8
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 76.7
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 4.7e-79 298.1 187 77.0
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 78.8
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 8.0e-79 297.4 191 79.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 8.0e-79 297.4 191 79.1
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.0e-78 297.0 189 77.2
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 76.7
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 76.7
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 76.7
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.8e-78 296.2 187 75.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 76.2
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 76.7
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 77.8
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.3e-78 295.8 189 76.2
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 3.0e-78 295.4 189 76.2
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 76.7
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 76.7
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 75.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 75.1
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 77.2
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 75.7
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 8.9e-78 293.9 189 76.2
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 8.9e-78 293.9 187 75.4
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 76.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 75.7
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.5e-77 293.1 187 74.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.5e-77 293.1 187 74.9
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.5e-77 293.1 188 77.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 2.6e-77 292.4 189 77.8
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.4e-77 292.0 189 74.1
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 5.7e-77 291.2 189 74.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 7.5e-77 290.8 189 74.1
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 9.8e-77 290.4 189 76.7
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 9.8e-77 290.4 189 76.7
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.3e-76 290.0 187 74.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.7e-76 289.7 189 76.7
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.7e-76 289.7 189 76.7
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.2e-76 289.3 189 75.7
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 75.1
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 4.9e-76 288.1 180 78.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 6.3e-76 287.7 189 74.6
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.8e-75 286.2 189 73.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.1e-75 285.4 189 75.7
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.4e-75 284.6 189 73.5
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 9.2e-75 283.9 189 72.5
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 7.8e-74 280.8 181 73.5
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.0e-73 280.4 189 73.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.0e-73 280.4 189 73.5
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.3e-73 280.0 189 73.0
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-72 276.6 189 75.7
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.2e-71 273.5 191 71.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 3.6e-71 271.9 191 71.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 6.1e-71 271.2 189 71.4
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.4e-70 270.0 170 77.1
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.8e-70 269.6 175 75.4
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.3e-68 263.5 189 69.3
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.7e-68 263.1 189 69.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.2e-68 262.7 189 67.7
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.2e-68 262.7 189 67.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 5.4e-67 258.1 189 65.6
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.3e-65 253.4 189 69.8
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.0e-65 251.5 180 69.4
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 8.6e-65 250.8 180 69.4
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 8.0e-63 244.2 189 68.3
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-62 243.4 178 70.2
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.5e-61 240.0 189 65.1
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.6e-61 239.2 189 61.9
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 7.5e-61 237.7 188 62.2
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.8e-61 237.3 189 66.7
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 3.7e-60 235.3 188 62.2
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 3.7e-60 235.3 188 61.7
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.3e-56 221.9 178 61.2
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.6e-55 219.9 189 56.1
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.8e-54 216.5 182 62.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.9e-51 206.5 166 67.5
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.4e-51 206.1 189 59.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 7.8e-50 201.1 115 83.5
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.2e-45 187.2 188 49.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-40 170.2 120 68.3
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.3e-38 161.8 174 54.0
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-37 160.2 109 73.4
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 7.6e-37 157.9 124 63.7
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 7.1e-35 151.4 123 65.9
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.6e-33 144.8 189 47.1
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.9e-32 143.3 85 82.4
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.3e-25 120.6 78 73.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.3e-20 104.0 91 61.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 6.4e-20 101.7 65 72.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 5.7e-08 62.0 39 69.2
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 2.2e-07 60.1 35 80.0


User provided reference genes

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