Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0324 Salvia bowleyana HOM05D001216 ORTHO05D005688 7.0e-50 200.3 100 100.0
SalBow7G2795 Salvia bowleyana HOM05D001216 ORTHO05D005688 1.7e-43 179.1 94 94.7
SGA_v2.0_scaffold198G41133 Striga asiatica HOM05D001216 ORTHO05D005688 2.8e-22 108.6 61 75.4
MSTRG.17397 Avicennia marina HOM05D001216 ORTHO05D005688 1.3e-19 99.8 61 75.4
Hma1.2p1_0494F.1_g165430 Hydrangea macrophylla HOM05D001216 ORTHO05D005688 2.2e-19 99.0 62 75.8
Phvul.001G209900 Phaseolus vulgaris HOM05D001216 ORTHO05D005688 7.1e-18 94.0 62 71.0
CAN.G862.66 Capsicum annuum HOM05D001216 ORTHO05D005688 2.1e-17 92.4 64 68.8
VMungo1383G0601 Vigna mungo HOM05D001216 ORTHO05D005688 2.1e-17 92.4 62 69.4
Dinv19670 Davidia involucrata HOM05D001216 ORTHO05D005688 2.7e-17 92.0 65 67.7
MD11G1306700 Malus domestica HOM05D001216 ORTHO05D005688 4.6e-17 91.3 69 69.6
Peaxi162Scf00001g03514 Petunia axillaris HOM05D001216 ORTHO05D005688 4.6e-17 91.3 63 71.4
Nitab4.5_0000116g0350 Nicotiana tabacum HOM05D001216 ORTHO05D005688 6.0e-17 90.9 66 69.7
CSS0031124 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 7.9e-17 90.5 65 67.7
Dinv33073 Davidia involucrata HOM05D001216 ORTHO05D005688 7.9e-17 90.5 64 65.6
Sopen09g036490 Solanum pennellii HOM05D001216 ORTHO05D005688 1.0e-16 90.1 68 66.2
Lalb_Chr15g0078431 Lupinus albus HOM05D001216 ORTHO05D005688 1.8e-16 89.4 61 70.5
Lalb_Chr18g0046881 Lupinus albus HOM05D001216 ORTHO05D005688 1.8e-16 89.4 61 68.9
Prupe.8G264600 Prunus persica HOM05D001216 ORTHO05D005688 1.8e-16 89.4 67 68.7
Lj1C22T13 Lonicera japonica HOM05D001216 ORTHO05D005688 2.3e-16 89.0 62 69.4
Solyc09g098580.3 Solanum lycopersicum HOM05D001216 ORTHO05D005688 2.3e-16 89.0 68 64.7
Solyc09g075390.4 Solanum lycopersicum HOM05D001216 ORTHO05D005688 3.0e-16 88.6 64 68.8
Sopen09g030160 Solanum pennellii HOM05D001216 ORTHO05D005688 3.0e-16 88.6 64 68.8
PGSC0003DMG400031817 Solanum tuberosum HOM05D001216 ORTHO05D005688 3.0e-16 88.6 64 68.8
PGSC0003DMG402006673 Solanum tuberosum HOM05D001216 ORTHO05D005688 3.0e-16 88.6 64 68.8
Manes.01G222100 Manihot esculenta HOM05D001216 ORTHO05D005688 5.1e-16 87.8 64 65.6
TAR362G1019 Trochodendron aralioides HOM05D001216 ORTHO05D005688 8.7e-16 87.0 60 71.7
CSS0041875 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 1.5e-15 86.3 68 63.2
Eucgr.H01087 Eucalyptus grandis HOM05D001216 ORTHO05D005688 1.5e-15 86.3 61 67.2
FAN24G0487 Fragaria x ananassa HOM05D001216 ORTHO05D005688 1.9e-15 85.9 72 62.5
Glyma.03G216400 Glycine max HOM05D001216 ORTHO05D005688 1.9e-15 85.9 61 70.5
Gohir.D12G132300 Gossypium hirsutum HOM05D001216 ORTHO05D005688 1.9e-15 85.9 64 70.3
Gorai.008G143400 Gossypium raimondii HOM05D001216 ORTHO05D005688 1.9e-15 85.9 64 70.3
FvH4_2g26030 Fragaria vesca HOM05D001216 ORTHO05D005688 2.5e-15 85.5 69 63.8
QL12p027872 Quercus lobata HOM05D001216 ORTHO05D005688 2.5e-15 85.5 60 68.3
Medtr7g108940 Medicago truncatula HOM05D001216 ORTHO05D005688 3.3e-15 85.1 60 68.3
Actinidia21029 Actinidia chinensis HOM05D001216 ORTHO05D005688 4.3e-15 84.7 63 68.3
Duzib211G0167 Durio zibethinus HOM05D001216 ORTHO05D005688 5.6e-15 84.3 64 67.2
FAN27G1041 Fragaria x ananassa HOM05D001216 ORTHO05D005688 5.6e-15 84.3 69 62.3
PGR119G1482 Punica granatum HOM05D001216 ORTHO05D005688 5.6e-15 84.3 64 65.6
arahy.Tifrunner.gnm1.ann1.2L0PS7 Arachis hypogaea HOM05D001216 ORTHO05D005688 7.4e-15 84.0 60 61.7
Ca_09190_v3 Cicer arietinum L. HOM05D001216 ORTHO05D005688 7.4e-15 84.0 48 75.0
RcHm_v2.0_Chr6g0294391 Rosa chinensis HOM05D001216 ORTHO05D005688 7.4e-15 84.0 61 65.6
Cpa.g.sc151.24 Carica papaya HOM05D001216 ORTHO05D005688 1.3e-14 83.2 64 64.1
vmacro15139 Vaccinium macrocarpon HOM05D001216 ORTHO05D005688 1.3e-14 83.2 82 56.1
Cc01_g21070 Coffea canephora HOM05D001216 ORTHO05D005688 2.1e-14 82.4 47 78.7
Gohir.D08G051800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 2.1e-14 82.4 64 65.6
Gorai.004G051900 Gossypium raimondii HOM05D001216 ORTHO05D005688 2.1e-14 82.4 64 65.6
ClCG10G011110 Citrullus lanatus HOM05D001216 ORTHO05D005688 2.8e-14 82.0 60 65.0
Glyma.19G212900 Glycine max HOM05D001216 ORTHO05D005688 2.8e-14 82.0 61 67.2
Sabra14G0094400 Salix brachista HOM05D001216 ORTHO05D005688 3.7e-14 81.6 66 63.6
AT4G02260 Arabidopsis thaliana HOM05D001216 ORTHO05D005688 4.8e-14 81.3 64 62.5
AL6G50870 Arabidopsis lyrata HOM05D001216 ORTHO05D005688 6.2e-14 80.9 64 60.9
Migut.D00133 Erythranthe guttata HOM05D001216 ORTHO05D005688 6.2e-14 80.9 59 64.4
MD03G1291500 Malus domestica HOM05D001216 ORTHO05D005688 6.2e-14 80.9 60 66.7
BraA09t35827Z Brassica rapa HOM05D001216 ORTHO05D005688 8.1e-14 80.5 64 62.5
COL.COLO4_23312 Corchorus olitorius HOM05D001216 ORTHO05D005688 8.1e-14 80.5 63 66.7
Haze_04975 Corylus avellana HOM05D001216 ORTHO05D005688 8.1e-14 80.5 60 63.3
FAN15G2312 Fragaria x ananassa HOM05D001216 ORTHO05D005688 8.1e-14 80.5 62 64.5
Sp6g02150 Schrenkiella parvula HOM05D001216 ORTHO05D005688 8.1e-14 80.5 64 62.5
Atru.chr5.1093 Acer truncatum HOM05D001216 ORTHO05D005688 1.4e-13 79.7 61 63.9
BcaB01g02061 Brassica carinata HOM05D001216 ORTHO05D005688 1.4e-13 79.7 64 60.9
CiPaw.07G111800 Carya illinoinensis HOM05D001216 ORTHO05D005688 1.4e-13 79.7 63 60.3
Potri.014G126700 Populus trichocarpa HOM05D001216 ORTHO05D005688 1.4e-13 79.7 66 63.6
Rhsim01G0287300 Rhododendron simsii HOM05D001216 ORTHO05D005688 1.4e-13 79.7 64 62.5
BcaC04g24051 Brassica carinata HOM05D001216 ORTHO05D005688 1.8e-13 79.3 64 60.9
Ciclev10018801m.g Citrus clementina HOM05D001216 ORTHO05D005688 2.4e-13 79.0 68 64.7
Thhalv10028413m.g Eutrema salsugineum HOM05D001216 ORTHO05D005688 3.1e-13 78.6 61 63.9
Sed0014889 Sechium edule HOM05D001216 ORTHO05D005688 3.1e-13 78.6 58 69.0
GSVIVG01028045001 Vitis vinifera HOM05D001216 ORTHO05D005688 3.1e-13 78.6 64 62.5
Duzib138G0177 Durio zibethinus HOM05D001216 ORTHO05D005688 4.0e-13 78.2 64 64.1
Nn3g21560 Nelumbo nucifera HOM05D001216 ORTHO05D005688 4.0e-13 78.2 82 52.4
TPR.G9647 Trifolium pratense HOM05D001216 ORTHO05D005688 4.0e-13 78.2 46 71.7
Aa31LG5G1920 Aethionema arabicum HOM05D001216 ORTHO05D005688 5.3e-13 77.8 47 76.6
C09p01790 Brassica napus HOM05D001216 ORTHO05D005688 5.3e-13 77.8 63 60.3
BolC9t53114H Brassica oleracea HOM05D001216 ORTHO05D005688 5.3e-13 77.8 63 60.3
Carub.0006s3491 Capsella rubella HOM05D001216 ORTHO05D005688 5.3e-13 77.8 64 59.4
Cfa005876 Carpinus fangiana HOM05D001216 ORTHO05D005688 6.9e-13 77.4 60 61.7
Lj1g0005208 Lotus japonicus HOM05D001216 ORTHO05D005688 6.9e-13 77.4 46 71.7
Thecc.01G304700 Theobroma cacao HOM05D001216 ORTHO05D005688 9.0e-13 77.0 46 73.9
A09p01720 Brassica napus HOM05D001216 ORTHO05D005688 1.5e-12 76.3 81 53.1
TWI14G0472 Tripterygium wilfordii HOM05D001216 ORTHO05D005688 1.5e-12 76.3 58 65.5
Nn4g25744 Nelumbo nucifera HOM05D001216 ORTHO05D005688 2.0e-12 75.9 47 72.3
THA.LOC104801287 Tarenaya hassleriana HOM05D001216 ORTHO05D005688 7.6e-12 73.9 67 61.2
MELO3C017941.2 Cucumis melo HOM05D001216 ORTHO05D005688 1.7e-11 72.8 46 76.1
CsaV3_4G000980 Cucumis sativus L. HOM05D001216 ORTHO05D005688 1.7e-11 72.8 46 76.1
Psat3g020360 Pisum sativum HOM05D001216 ORTHO05D005688 1.9e-10 69.3 47 66.0
ECA248G1090 Erigeron canadensis HOM05D001216 ORTHO05D005688 2.5e-10 68.9 45 68.9
BcaC03g16112 Brassica carinata HOM05D001216 ORTHO05D005688 3.2e-10 68.6 61 62.3
C02p38830 Brassica napus HOM05D001216 ORTHO05D005688 4.2e-10 68.2 61 62.3
Lsat_1_v5_gn_9_5980 Lactuca sativa HOM05D001216 ORTHO05D005688 4.2e-10 68.2 65 55.4
PSO832G4554 Papaver somniferum HOM05D001216 ORTHO05D005688 7.1e-10 67.4 69 55.1
Aqoxy5G00793 Aquilegia oxysepala HOM05D001216 ORTHO05D005688 9.3e-10 67.0 47 68.1
BcaB05g23611 Brassica carinata HOM05D001216 ORTHO05D005688 1.6e-09 66.2 61 57.4
MBI19_g30015_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D005688 1.6e-09 66.2 55 60.0
HanXRQChr01g0000981 Helianthus annuus HOM05D001216 ORTHO05D005688 2.1e-09 65.9 45 60.0
EL10Ac7g17565 Beta vulgaris HOM05D001216 ORTHO05D005688 3.5e-09 65.1 72 51.4
Nitab4.5_0001859g0010 Nicotiana tabacum HOM05D001216 ORTHO05D005688 4.6e-09 64.7 53 62.3
PSO210G0295 Papaver somniferum HOM05D001216 ORTHO05D005688 6.0e-09 64.3 63 57.1
Ah.15g092990 Amaranthus hybridus HOM05D001216 ORTHO05D005688 2.3e-08 62.4 63 50.8
CDE09G0061 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 2.3e-08 62.4 66 57.6
ATR0693G436 Amborella trichopoda HOM05D001216 ORTHO05D005688 3.0e-08 62.0 43 62.8
HanXRQChr15g0465121 Helianthus annuus HOM05D001216 ORTHO05D005688 1.5e-07 59.7 51 58.8
Oeu008349.2 Olea europaea HOM05D001216 ORTHO05D005688 1.9e-07 59.3 57 49.1
HPP92_001318 Vanilla planifolia HOM05D001216 ORTHO05D005688 9.6e-07 57.0 64 42.2
CDE02G3697 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 2.8e-06 55.5 65 50.8
DCAR_018318 Daucus carota HOM05D001216 ORTHO05D005688 3.7e-06 55.1 32 71.9


User provided reference genes

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