Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G4134 Salvia bowleyana HOM05D005573 ORTHO05D007161 3.0e-108 395.2 202 100.0
Migut.D01426 Erythranthe guttata HOM05D005573 ORTHO05D007161 2.2e-103 379.0 202 95.5
Lsat_1_v5_gn_3_99201 Lactuca sativa HOM05D005573 ORTHO05D007161 2.8e-98 362.1 202 91.6
Hma1.2p1_0248F.1_g102160 Hydrangea macrophylla HOM05D005573 ORTHO05D007161 6.3e-98 360.9 202 91.1
HanXRQChr02g0041471 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
HanXRQChr02g0044961 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
HanXRQChr07g0201021 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
HanXRQChr08g0210291 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
HanXRQChr10g0289201 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
HanXRQChr11g0326731 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
HanXRQCPg0579941 Helianthus annuus HOM05D005573 ORTHO05D007161 8.2e-98 360.5 202 91.1
PGR111G0074 Punica granatum HOM05D005573 ORTHO05D007161 3.1e-97 358.6 202 90.1
CAN.G551.66 Capsicum annuum HOM05D005573 ORTHO05D007161 1.6e-96 356.3 202 90.1
CAN.G65.126 Capsicum annuum HOM05D005573 ORTHO05D007161 1.6e-96 356.3 202 90.1
DCAR_032486 Daucus carota HOM05D005573 ORTHO05D007161 1.6e-96 356.3 202 90.1
arahy.Tifrunner.gnm1.ann1.DMW7HF Arachis hypogaea HOM05D005573 ORTHO05D007161 1.0e-95 353.6 202 87.6
Nn1g10181 Nelumbo nucifera HOM05D005573 ORTHO05D007161 6.5e-95 350.9 202 89.1
Nn1g10183 Nelumbo nucifera HOM05D005573 ORTHO05D007161 6.5e-95 350.9 202 89.1
CAN.G1183.7 Capsicum annuum HOM05D005573 ORTHO05D007161 1.1e-94 350.1 202 88.6
PSO548G0019 Papaver somniferum HOM05D005573 ORTHO05D007161 2.5e-94 349.0 202 89.1
Sed0002328 Sechium edule HOM05D005573 ORTHO05D007161 7.2e-94 347.4 202 87.6
Sed0008322 Sechium edule HOM05D005573 ORTHO05D007161 7.2e-94 347.4 202 87.6
LjContig00318g0014176 Lotus japonicus HOM05D005573 ORTHO05D007161 9.4e-94 347.1 202 87.6
Medtr4g051220 Medicago truncatula HOM05D005573 ORTHO05D007161 1.6e-93 346.3 202 87.6
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 3.6e-93 345.1 202 87.1
CARHR282030 Cardamine hirsuta HOM05D005573 ORTHO05D007161 6.1e-93 344.4 202 89.1
A06p23260 Brassica napus HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BNapus_Darmor_BZH_scaffold_287p00070 Brassica napus HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BolSC45t60866H Brassica oleracea HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BolSC45t60946H Brassica oleracea HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BolSC46t60993H Brassica oleracea HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BolSC46t61042H Brassica oleracea HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BraA06t25428Z Brassica rapa HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BraSC140t45578Z Brassica rapa HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
BraSC151t45711Z Brassica rapa HOM05D005573 ORTHO05D007161 1.8e-92 342.8 202 88.6
Gohir.A08G157500 Gossypium hirsutum HOM05D005573 ORTHO05D007161 3.0e-92 342.0 202 87.1
AL2G20730 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 6.8e-92 340.9 202 88.6
ATCG00380 Arabidopsis thaliana HOM05D005573 ORTHO05D007161 2.6e-91 339.0 202 88.1
AL2G21420 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 3.4e-91 338.6 202 88.1
Oeu012806.1 Olea europaea HOM05D005573 ORTHO05D007161 1.6e-88 329.7 199 84.4
BolSC49t61189H Brassica oleracea HOM05D005573 ORTHO05D007161 7.7e-88 327.4 204 86.3
Lj2P1237T91 Lonicera japonica HOM05D005573 ORTHO05D007161 1.1e-86 323.6 204 84.8
Lj2P1239T179 Lonicera japonica HOM05D005573 ORTHO05D007161 1.1e-86 323.6 204 84.8
Lj4g0013543 Lotus japonicus HOM05D005573 ORTHO05D007161 2.1e-85 319.3 202 83.2
Zm00001eb039080 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Zm00001eb039210 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Zm00001eb435020 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Zm00001eb435220 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Zm00001eb435420 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Zm00001eb435680 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Zm00001eb440990 Zea mays HOM05D005573 ORTHO05D007161 1.8e-84 316.2 202 80.2
Gohir.D04G083800 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.7e-82 309.7 202 80.7
Glyma.01G153400 Glycine max HOM05D005573 ORTHO05D007161 1.6e-80 303.1 185 81.6
EL10As12g24021 Beta vulgaris HOM05D005573 ORTHO05D007161 1.1e-78 297.0 200 76.0
PGSC0003DMG400024039 Solanum tuberosum HOM05D005573 ORTHO05D007161 7.2e-78 294.3 182 84.6
Gorai.006G201300 Gossypium raimondii HOM05D005573 ORTHO05D007161 3.7e-74 282.0 182 81.3
Gohir.D09G179300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.8e-73 279.6 182 80.8
Medtr0002s0590 Medicago truncatula HOM05D005573 ORTHO05D007161 3.2e-73 278.9 182 78.0
C09p29560 Brassica napus HOM05D005573 ORTHO05D007161 1.1e-70 270.4 155 91.0
Zm00001eb039100 Zea mays HOM05D005573 ORTHO05D007161 6.1e-69 264.6 172 79.1
Zm00001eb231240 Zea mays HOM05D005573 ORTHO05D007161 9.8e-67 257.3 177 75.7
Thhalv10010766m.g Eutrema salsugineum HOM05D005573 ORTHO05D007161 3.7e-66 255.4 202 71.3
Nitab4.5_0006596g0030 Nicotiana tabacum HOM05D005573 ORTHO05D007161 2.3e-63 246.1 151 85.4
Lalb_Chr07g0191491 Lupinus albus HOM05D005573 ORTHO05D007161 8.6e-63 244.2 151 83.4
SEGI_18745 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 1.6e-61 240.0 208 63.0
Solyc09g015330.2 Solanum lycopersicum HOM05D005573 ORTHO05D007161 4.7e-61 238.4 156 82.1
TWI60G0396 Tripterygium wilfordii HOM05D005573 ORTHO05D007161 1.4e-60 236.9 138 85.5
Gohir.A09G103300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.5e-59 233.4 148 83.8
GSVIVG01021975001 Vitis vinifera HOM05D005573 ORTHO05D007161 1.6e-56 223.4 132 87.9
arahy.Tifrunner.gnm1.ann1.NT5R3P Arachis hypogaea HOM05D005573 ORTHO05D007161 2.2e-50 203.0 149 72.5
HanXRQChr13g0413641 Helianthus annuus HOM05D005573 ORTHO05D007161 1.4e-49 200.3 114 86.8
HanXRQChr13g0413711 Helianthus annuus HOM05D005573 ORTHO05D007161 1.4e-49 200.3 114 86.8
HanXRQChr13g0413781 Helianthus annuus HOM05D005573 ORTHO05D007161 1.4e-49 200.3 114 86.8
HanXRQChr13g0413861 Helianthus annuus HOM05D005573 ORTHO05D007161 1.4e-49 200.3 114 86.8
HanXRQChr13g0413931 Helianthus annuus HOM05D005573 ORTHO05D007161 1.4e-49 200.3 114 86.8
Nn2g13212 Nelumbo nucifera HOM05D005573 ORTHO05D007161 5.4e-49 198.4 114 86.0
Nn423s46610 Nelumbo nucifera HOM05D005573 ORTHO05D007161 5.4e-49 198.4 114 86.0
Eucgr.B02956 Eucalyptus grandis HOM05D005573 ORTHO05D007161 6.0e-48 194.9 114 82.5
Nn6g33243 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.3e-47 193.7 114 84.2
Gohir.A10G100366 Gossypium hirsutum HOM05D005573 ORTHO05D007161 3.0e-47 192.6 114 82.5
Oeu062838.1 Olea europaea HOM05D005573 ORTHO05D007161 1.5e-46 190.3 129 80.6
CDE08G0454 Ceratophyllum demersum HOM05D000219 ORTHO05D000226 9.6e-46 187.6 114 81.6
ClCG00G003940 Citrullus lanatus HOM05D005573 ORTHO05D007161 8.1e-45 184.5 101 94.1
Gohir.A07G163636 Gossypium hirsutum HOM05D005573 ORTHO05D007161 8.1e-45 184.5 114 80.7
CAN.G1478.12 Capsicum annuum HOM05D005573 ORTHO05D007161 5.2e-44 181.8 103 87.4
Potri.013G163300 Populus trichocarpa HOM05D005573 ORTHO05D007161 6.8e-44 181.4 103 85.4
Zm00001eb438350 Zea mays HOM05D005573 ORTHO05D007161 3.4e-43 179.1 114 78.1
Solyc09g015310.3 Solanum lycopersicum HOM05D005573 ORTHO05D007161 4.9e-42 175.3 102 83.3
CAN.G100.47 Capsicum annuum HOM05D005573 ORTHO05D007161 4.2e-41 172.2 103 82.5
CAN.G129.6 Capsicum annuum HOM05D005573 ORTHO05D007161 7.1e-41 171.4 103 81.6
Lalb_Chr15g0080691 Lupinus albus HOM05D005573 ORTHO05D007161 7.8e-40 167.9 103 77.7
BraSC25t45875Z Brassica rapa HOM05D005573 ORTHO05D007161 1.9e-38 163.3 103 81.6
Phvul.011G056580 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 3.3e-38 162.5 101 82.2
Phvul.008G150500 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 3.6e-37 159.1 94 77.7
Migut.D01353 Erythranthe guttata HOM05D005573 ORTHO05D007161 4.8e-37 158.7 141 64.5
Nn5g30925 Nelumbo nucifera HOM05D005573 ORTHO05D007161 5.3e-36 155.2 90 83.3
SMO086G0035 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 2.2e-34 149.8 190 48.4
SMO086G0038 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 2.2e-34 149.8 190 48.4
BolC9t56936H Brassica oleracea HOM05D005573 ORTHO05D007161 2.3e-31 139.8 77 90.9
arahy.Tifrunner.gnm1.ann1.NAZW4C Arachis hypogaea HOM05D005573 ORTHO05D007161 5.6e-30 135.2 104 68.3
Zm00001eb434930 Zea mays HOM05D005573 ORTHO05D007161 2.1e-29 133.3 89 74.2
Gohir.A09G045300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 6.9e-28 128.3 69 94.2
SEGI_40009 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 9.9e-27 124.4 108 63.9
BolSC47t61119H Brassica oleracea HOM05D005573 ORTHO05D007161 8.4e-26 121.3 64 95.3
Oeu056456.1 Olea europaea HOM05D005573 ORTHO05D007161 8.4e-26 121.3 66 86.4
Gohir.A09G045446 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.4e-25 120.6 74 81.1
CAN.G63.13 Capsicum annuum HOM05D005573 ORTHO05D007161 3.2e-25 119.4 77 75.3
TAR625G0941 Trochodendron aralioides HOM05D005573 ORTHO05D007161 7.1e-25 118.2 75 74.7
CAN.G653.3 Capsicum annuum HOM05D005573 ORTHO05D007161 1.6e-24 117.1 66 86.4
HanXRQChr00c0345g0573881 Helianthus annuus HOM05D005573 ORTHO05D007161 2.7e-24 116.3 67 85.1
CiPaw.12G056900 Carya illinoinensis HOM05D005573 ORTHO05D007161 2.3e-23 113.2 74 74.3
BolSC29t60458H Brassica oleracea HOM05D005573 ORTHO05D007161 5.1e-23 112.1 67 85.1
BolSC47t61104H Brassica oleracea HOM05D005573 ORTHO05D007161 5.1e-23 112.1 67 85.1
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 5.1e-23 112.1 79 75.9
Solyc11g022610.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 7.4e-22 108.2 76 80.3
Nn071s42388 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.3e-21 107.5 90 75.6
BolC7t41664H Brassica oleracea HOM05D005573 ORTHO05D007161 2.0e-19 100.1 76 68.4
Mapoly0090s0058 Marchantia polymorpha HOM05D005573 ORTHO05D007161 3.4e-19 99.4 66 71.2
CAN.G331.1 Capsicum annuum HOM05D005573 ORTHO05D007161 1.7e-18 97.1 66 69.7
Oeu052069.1 Olea europaea HOM05D005573 ORTHO05D007161 3.2e-17 92.8 109 54.1
TAR375G0006 Trochodendron aralioides HOM05D005573 ORTHO05D007161 3.2e-17 92.8 61 73.8
MELO3C027485.2 Cucumis melo HOM05D005573 ORTHO05D007161 3.5e-16 89.4 50 86.0
MELO3C022836.2 Cucumis melo HOM05D005573 ORTHO05D007161 1.0e-15 87.8 49 85.7
Nn055s41940 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.3e-15 86.7 59 74.6
BraSC25t45840Z Brassica rapa HOM05D005573 ORTHO05D007161 2.5e-14 83.2 52 84.6
Oeu042745.1 Olea europaea HOM05D005573 ORTHO05D007161 4.3e-14 82.4 104 51.9
HanXRQChr13g0413681 Helianthus annuus HOM05D005573 ORTHO05D029920 5.7e-14 82.0 98 51.0
HanXRQChr13g0413751 Helianthus annuus HOM05D005573 ORTHO05D029920 5.7e-14 82.0 98 51.0
HanXRQChr13g0413831 Helianthus annuus HOM05D005573 ORTHO05D029920 5.7e-14 82.0 98 51.0
HanXRQChr13g0413901 Helianthus annuus HOM05D005573 ORTHO05D029920 5.7e-14 82.0 98 51.0
Solyc11g022620.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 5.7e-14 82.0 55 69.1
Nn021s41552 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.8e-13 79.7 41 95.1
Nitab4.5_0000261g0250 Nicotiana tabacum HOM05D005573 ORTHO05D007161 2.4e-12 76.6 42 83.3
Oeu041772.1 Olea europaea HOM05D005573 ORTHO05D007161 2.4e-12 76.6 60 66.7
Nn055s41939 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.6e-11 73.2 37 94.6
BolC9t55817H Brassica oleracea HOM05D005573 ORTHO05D007161 6.5e-10 68.6 48 75.0
ClCG11G007200 Citrullus lanatus HOM05D005573 ORTHO05D007161 6.5e-10 68.6 46 71.7
BolSC29t60581H Brassica oleracea HOM05D005573 ORTHO05D007161 1.9e-09 67.0 36 94.4
Glyma.18G203700 Glycine max HOM05D005573 ORTHO05D007161 6.1e-08 62.0 40 77.5


User provided reference genes

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