Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G1285 Salvia bowleyana HOM05D001433 ORTHO05D005172 1.1e-145 520.0 268 100.0
SalBow6G4365 Salvia bowleyana HOM05D001433 ORTHO05D005172 2.9e-18 96.7 126 46.8
Rhsim03G0040000 Rhododendron simsii HOM05D001433 ORTHO05D005172 3.6e-16 89.7 55 72.7
FAN09G1016 Fragaria x ananassa HOM05D001433 ORTHO05D005172 8.0e-16 88.6 92 50.0
EL10Ac3g07231 Beta vulgaris HOM05D001433 ORTHO05D005172 1.0e-15 88.2 76 55.3
COL.COLO4_36598 Corchorus olitorius HOM05D001433 ORTHO05D005172 1.0e-15 88.2 73 58.9
vmacro07800 Vaccinium macrocarpon HOM05D001433 ORTHO05D005172 1.0e-15 88.2 67 64.2
Lj1A1093G56 Lonicera japonica HOM05D001433 ORTHO05D005172 1.4e-15 87.8 54 75.9
MSTRG.19811 Avicennia marina HOM05D001433 ORTHO05D005172 1.8e-15 87.4 54 72.2
Dinv09721 Davidia involucrata HOM05D001433 ORTHO05D005172 1.8e-15 87.4 54 74.1
Cc06_g19130 Coffea canephora HOM05D001433 ORTHO05D005172 2.3e-15 87.0 54 72.2
Lsat_1_v5_gn_5_158001 Lactuca sativa HOM05D001433 ORTHO05D005172 2.3e-15 87.0 69 62.3
Atru.chr1.1446 Acer truncatum HOM05D001433 ORTHO05D005172 3.0e-15 86.7 105 44.8
arahy.Tifrunner.gnm1.ann1.1I7GZ6 Arachis hypogaea HOM05D001433 ORTHO05D005172 3.0e-15 86.7 91 51.6
arahy.Tifrunner.gnm1.ann1.NBNL1F Arachis hypogaea HOM05D001433 ORTHO05D005172 3.0e-15 86.7 91 51.6
Cpa.g.sc5.173 Carica papaya HOM05D001433 ORTHO05D005172 3.0e-15 86.7 73 58.9
Ciclev10004137m.g Citrus clementina HOM05D001433 ORTHO05D005172 3.0e-15 86.7 99 45.5
Duzib093G1354 Durio zibethinus HOM05D001433 ORTHO05D005172 3.0e-15 86.7 79 57.0
VMungo1383G1842 Vigna mungo HOM05D001433 ORTHO05D005172 3.0e-15 86.7 65 63.1
ATR0745G061 Amborella trichopoda HOM05D001433 ORTHO05D005172 4.0e-15 86.3 54 74.1
Glyma.03G128300 Glycine max HOM05D001433 ORTHO05D005172 4.0e-15 86.3 75 57.3
Medtr7g089970 Medicago truncatula HOM05D001433 ORTHO05D005172 4.0e-15 86.3 95 51.6
Phvul.001G123900 Phaseolus vulgaris HOM05D001433 ORTHO05D005172 4.0e-15 86.3 75 57.3
PGR031G1148 Punica granatum HOM05D001433 ORTHO05D005172 4.0e-15 86.3 54 74.1
Sc13g0001150 Simmondsia chinensis HOM05D001433 ORTHO05D005172 4.0e-15 86.3 61 63.9
Ca_08395_v3 Cicer arietinum L. HOM05D001433 ORTHO05D005172 5.2e-15 85.9 54 72.2
Migut.J01662 Erythranthe guttata HOM05D001433 ORTHO05D005172 5.2e-15 85.9 53 73.6
Nn7g36729 Nelumbo nucifera HOM05D001433 ORTHO05D005172 5.2e-15 85.9 54 72.2
Sabra06G0025800 Salix brachista HOM05D001433 ORTHO05D005172 5.2e-15 85.9 54 72.2
HanXRQChr03g0061571 Helianthus annuus HOM05D001433 ORTHO05D005172 6.8e-15 85.5 54 70.4
Lalb_Chr22g0357391 Lupinus albus HOM05D001433 ORTHO05D005172 6.8e-15 85.5 54 72.2
Potri.006G038400 Populus trichocarpa HOM05D001433 ORTHO05D005172 6.8e-15 85.5 54 72.2
Sabra16G0039100 Salix brachista HOM05D001433 ORTHO05D005172 6.8e-15 85.5 54 72.2
SGA_v2.0_scaffold105G30296 Striga asiatica HOM05D001433 ORTHO05D005172 8.9e-15 85.1 53 73.6
CSS0039913 Camellia sinensis var. sinensis HOM05D001433 ORTHO05D005172 1.2e-14 84.7 71 59.2
Cfa020008 Carpinus fangiana HOM05D001433 ORTHO05D005172 1.2e-14 84.7 72 59.7
CiPaw.10G039900 Carya illinoinensis HOM05D001433 ORTHO05D005172 1.2e-14 84.7 54 72.2
CsaV3_3G040230 Cucumis sativus L. HOM05D001433 ORTHO05D005172 1.2e-14 84.7 54 68.5
Potri.016G036900 Populus trichocarpa HOM05D001433 ORTHO05D005172 1.2e-14 84.7 54 70.4
Sed0001320 Sechium edule HOM05D001433 ORTHO05D005172 1.2e-14 84.7 54 68.5
TWI77G0540 Tripterygium wilfordii HOM05D001433 ORTHO05D005172 1.2e-14 84.7 54 68.5
ClCG10G016190 Citrullus lanatus HOM05D001433 ORTHO05D005172 1.5e-14 84.3 66 59.1
Peaxi162Scf00076g00532 Petunia axillaris HOM05D001433 ORTHO05D005172 1.5e-14 84.3 59 66.1
RcHm_v2.0_Chr2g0125471 Rosa chinensis HOM05D001433 ORTHO05D005172 1.5e-14 84.3 54 70.4
TWI74G1565 Tripterygium wilfordii HOM05D001433 ORTHO05D005172 1.5e-14 84.3 54 68.5
Actinidia17946 Actinidia chinensis HOM05D001433 ORTHO05D005172 2.0e-14 84.0 54 70.4
DCAR_020565 Daucus carota HOM05D001433 ORTHO05D005172 2.0e-14 84.0 53 73.6
FvH4_6g25460 Fragaria vesca HOM05D001433 ORTHO05D005172 2.0e-14 84.0 54 68.5
Glyma.19G130800 Glycine max HOM05D001433 ORTHO05D005172 2.0e-14 84.0 110 46.4
Gohir.A01G193200 Gossypium hirsutum HOM05D001433 ORTHO05D005172 2.0e-14 84.0 76 53.9
GSVIVG01033621001 Vitis vinifera HOM05D001433 ORTHO05D005172 2.0e-14 84.0 54 68.5
Gohir.D01G183500 Gossypium hirsutum HOM05D001433 ORTHO05D005172 2.6e-14 83.6 54 68.5
Gorai.002G226600 Gossypium raimondii HOM05D001433 ORTHO05D005172 2.6e-14 83.6 54 68.5
MBI13_g34981_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D005172 2.6e-14 83.6 54 68.5
Manes.09G005600 Manihot esculenta HOM05D001433 ORTHO05D005172 2.6e-14 83.6 54 68.5
Hund19100 Selenicereus undatus HOM05D001433 ORTHO05D005172 2.6e-14 83.6 54 66.7
Duzib128G0892 Durio zibethinus HOM05D001433 ORTHO05D005172 3.4e-14 83.2 76 53.9
FAN05G2108 Fragaria x ananassa HOM05D001433 ORTHO05D005172 3.4e-14 83.2 92 46.7
QL07p010117 Quercus lobata HOM05D001433 ORTHO05D005172 3.4e-14 83.2 54 72.2
TAR636G2034 Trochodendron aralioides HOM05D001433 ORTHO05D005172 3.4e-14 83.2 54 70.4
Actinidia01816 Actinidia chinensis HOM05D001433 ORTHO05D005172 4.4e-14 82.8 54 68.5
Actinidia09260 Actinidia chinensis HOM05D001433 ORTHO05D005172 4.4e-14 82.8 54 68.5
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 4.4e-14 82.8 54 66.7
Lj1g0005026 Lotus japonicus HOM05D001433 ORTHO05D005172 4.4e-14 82.8 54 70.4
Prupe.7G039100 Prunus persica HOM05D001433 ORTHO05D005172 4.4e-14 82.8 70 58.6
PSO339G5940 Papaver somniferum HOM05D001433 ORTHO05D005172 5.7e-14 82.4 67 59.7
PSO384G1328 Papaver somniferum HOM05D001433 ORTHO05D005172 5.7e-14 82.4 67 59.7
TPR.G30627 Trifolium pratense HOM05D001433 ORTHO05D005172 7.5e-14 82.0 51 70.6
Carub.0006s0309 Capsella rubella HOM05D001433 ORTHO05D005172 9.8e-14 81.6 71 54.9
Haze_20222 Corylus avellana HOM05D001433 ORTHO05D005172 9.8e-14 81.6 54 68.5
MD14G1087500 Malus domestica HOM05D001433 ORTHO05D005172 9.8e-14 81.6 75 54.7
Solyc03g063560.3 Solanum lycopersicum HOM05D001433 ORTHO05D005172 9.8e-14 81.6 54 70.4
Sopen03g016230 Solanum pennellii HOM05D001433 ORTHO05D005172 9.8e-14 81.6 54 70.4
PGSC0003DMG400009698 Solanum tuberosum HOM05D001433 ORTHO05D005172 9.8e-14 81.6 54 70.4
Actinidia32305 Actinidia chinensis HOM05D001433 ORTHO05D005172 1.7e-13 80.9 52 69.2
AUR62030325 Chenopodium quinoa HOM05D001433 ORTHO05D005172 1.7e-13 80.9 56 60.7
Nitab4.5_0000415g0090 Nicotiana tabacum HOM05D001433 ORTHO05D005172 1.7e-13 80.9 54 68.5
Nitab4.5_0002936g0040 Nicotiana tabacum HOM05D001433 ORTHO05D005172 1.7e-13 80.9 54 68.5
AUR62018342 Chenopodium quinoa HOM05D001433 ORTHO05D005172 2.2e-13 80.5 67 53.7
Os07g0658400 Oryza sativa ssp. japonica HOM05D001433 ORTHO05D005172 2.2e-13 80.5 74 52.7
Hund24590 Selenicereus undatus HOM05D001433 ORTHO05D005172 2.2e-13 80.5 65 56.9
Aa31LG1G21190 Aethionema arabicum HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
AL6G13760 Arabidopsis lyrata HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
BcaC06g32116 Brassica carinata HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
A10p32000 Brassica napus HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
C09p72720 Brassica napus HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
BolC9t60011H Brassica oleracea HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
BraA10t45244Z Brassica rapa HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
CARHR209130 Cardamine hirsuta HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
Eucgr.A02249 Eucalyptus grandis HOM05D001433 ORTHO05D005172 2.8e-13 80.1 100 47.0
Mapoly0023s0027 Marchantia polymorpha HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 63.0
Sp6g38610 Schrenkiella parvula HOM05D001433 ORTHO05D005172 2.8e-13 80.1 54 68.5
AT5G04140 Arabidopsis thaliana HOM05D001433 ORTHO05D005172 3.7e-13 79.7 85 48.2
Thhalv10012425m.g Eutrema salsugineum HOM05D001433 ORTHO05D005172 3.7e-13 79.7 54 68.5
CANSAT64G0825 Cannabis sativa HOM05D001433 ORTHO05D005172 4.9e-13 79.3 54 66.7
CDE09G0018 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 6.3e-13 79.0 54 66.7
unitig_37.g12790 Utricularia gibba HOM05D001433 ORTHO05D005172 6.3e-13 79.0 54 64.8
Zm00001eb329710 Zea mays HOM05D001433 ORTHO05D005172 6.3e-13 79.0 68 52.9
Aqoxy2G00387 Aquilegia oxysepala HOM05D001433 ORTHO05D005172 8.3e-13 78.6 54 64.8
THA.LOC104816414 Tarenaya hassleriana HOM05D001433 ORTHO05D005172 8.3e-13 78.6 54 66.7
CAN.G396.17 Capsicum annuum HOM05D001433 ORTHO05D005172 1.4e-12 77.8 115 45.2
Pp3c8_17940 Physcomitrium patens HOM05D001433 ORTHO05D005172 1.4e-12 77.8 54 63.0
Thecc.05G135300 Theobroma cacao HOM05D001433 ORTHO05D005172 2.4e-12 77.0 118 41.5
HPP92_006726 Vanilla planifolia HOM05D001433 ORTHO05D005172 3.2e-12 76.6 54 63.0
BcaC01g05353 Brassica carinata HOM05D001433 ORTHO05D005172 4.1e-12 76.3 54 63.0
A03p23140 Brassica napus HOM05D001433 ORTHO05D005172 4.1e-12 76.3 54 63.0
C03p27570 Brassica napus HOM05D001433 ORTHO05D005172 4.1e-12 76.3 54 63.0
BraA03t11535Z Brassica rapa HOM05D001433 ORTHO05D005172 4.1e-12 76.3 54 63.0
Pp3c7_6520 Physcomitrium patens HOM05D001433 ORTHO05D005172 5.4e-12 75.9 71 50.7
Aa31LG3G780 Aethionema arabicum HOM05D001433 ORTHO05D005172 7.0e-12 75.5 54 63.0
AL4G39190 Arabidopsis lyrata HOM05D001433 ORTHO05D005172 9.2e-12 75.1 54 61.1
AT2G41220 Arabidopsis thaliana HOM05D001433 ORTHO05D005172 9.2e-12 75.1 54 61.1
Ah.04g150990 Amaranthus hybridus HOM05D001433 ORTHO05D005172 1.2e-11 74.7 55 61.8
BcaC02g12843 Brassica carinata HOM05D001433 ORTHO05D005172 1.6e-11 74.3 54 61.1
A04p31400 Brassica napus HOM05D001433 ORTHO05D005172 1.6e-11 74.3 54 61.1
BolC3t15130H Brassica oleracea HOM05D001433 ORTHO05D005172 1.6e-11 74.3 54 61.1
BolC4t28386H Brassica oleracea HOM05D001433 ORTHO05D005172 1.6e-11 74.3 54 61.1
BraA04t18598Z Brassica rapa HOM05D001433 ORTHO05D005172 1.6e-11 74.3 54 61.1
CARHR136310 Cardamine hirsuta HOM05D001433 ORTHO05D005172 2.0e-11 73.9 54 61.1
SEGI_31493 Sequoiadendron giganteum HOM05D001433 ORTHO05D005172 2.0e-11 73.9 51 64.7
Sp4g23520 Schrenkiella parvula HOM05D001433 ORTHO05D005172 2.7e-11 73.6 54 61.1
Thhalv10016134m.g Eutrema salsugineum HOM05D001433 ORTHO05D005172 1.0e-10 71.6 137 35.0
BcaB01g03483 Brassica carinata HOM05D001433 ORTHO05D005172 2.3e-10 70.5 132 36.4
C04p68830 Brassica napus HOM05D001433 ORTHO05D005172 5.0e-10 69.3 135 38.5
Cre12.g514050 Chlamydomonas reinhardtii HOM05D001433 ORTHO05D005172 1.5e-09 67.8 65 47.7
CBR_g38420 Chara braunii HOM05D001433 ORTHO05D005172 6.1e-08 62.4 54 50.0
MCO12G340 Micromonas commoda HOM05D001433 ORTHO05D005172 5.2e-07 59.3 129 33.3


User provided reference genes

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