Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 8.3e-290 999.6 481 100.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.4e-55 219.5 267 48.7
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 6.0e-46 189.5 229 46.7
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.4e-39 167.5 247 43.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.4e-34 151.8 282 35.8
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.0e-34 149.1 264 38.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 5.8e-33 146.4 181 45.3
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.9e-32 144.1 392 30.9
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 3.2e-31 140.6 261 35.6
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.1e-31 139.4 238 37.8
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-29 134.4 264 34.1
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.1e-29 133.3 253 33.2
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 6.6e-29 132.9 303 31.4
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 8.7e-29 132.5 283 33.6
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-28 132.1 253 34.4
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.9e-28 131.3 229 36.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.5e-28 131.0 262 34.7
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 4.3e-28 130.2 293 30.7
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.3e-28 130.2 270 34.4
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 5.6e-28 129.8 270 32.6
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 9.6e-28 129.0 273 33.3
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.6e-27 128.3 277 32.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 2.1e-27 127.9 273 33.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 2.1e-27 127.9 275 31.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.8e-27 127.5 252 35.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 3.6e-27 127.1 302 30.8
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.6e-27 127.1 302 30.8
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 4.8e-27 126.7 302 30.8
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 4.8e-27 126.7 302 30.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 6.2e-27 126.3 250 32.4
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 6.2e-27 126.3 302 30.8
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.1e-27 125.9 252 34.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.1e-26 125.6 314 29.6
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.1e-26 125.6 276 31.5
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 2.4e-26 124.4 251 33.1
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.4e-26 124.4 298 31.2
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 3.1e-26 124.0 273 31.5
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.0e-26 123.6 273 31.1
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 4.0e-26 123.6 262 32.1
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 5.3e-26 123.2 232 35.3
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 5.3e-26 123.2 329 30.1
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 5.3e-26 123.2 298 30.9
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.9e-26 122.9 260 31.2
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.9e-26 122.9 260 31.2
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 9.0e-26 122.5 314 29.6
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.2e-25 122.1 264 31.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-25 122.1 284 31.3
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.5e-25 121.7 253 32.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 2.0e-25 121.3 255 34.1
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-25 121.3 249 32.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-25 121.3 264 32.6
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.0e-25 121.3 314 29.6
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.6e-25 120.9 264 31.4
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.6e-25 120.9 249 32.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 3.4e-25 120.6 286 30.8
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 4.5e-25 120.2 270 33.7
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.8e-25 119.8 266 31.6
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 9.9e-25 119.0 254 35.4
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 9.9e-25 119.0 248 33.5
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 9.9e-25 119.0 246 33.7
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.3e-24 118.6 255 31.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.2e-24 117.9 266 30.8
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.2e-24 117.9 258 31.4
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.2e-24 117.9 221 35.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.9e-24 117.5 213 38.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.9e-24 117.5 213 38.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.9e-24 117.5 213 38.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.9e-24 117.5 251 32.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.9e-24 117.5 251 32.3
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.8e-24 117.1 250 33.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 3.8e-24 117.1 271 31.7
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 4.9e-24 116.7 249 33.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 4.9e-24 116.7 248 33.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 4.9e-24 116.7 248 31.9
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 4.9e-24 116.7 260 31.2
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.4e-24 116.3 248 31.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 6.4e-24 116.3 261 31.0
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 8.4e-24 115.9 261 31.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 8.4e-24 115.9 245 34.7
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.1e-23 115.5 226 35.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.1e-23 115.5 254 31.9
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.4e-23 115.2 338 28.7
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.9e-23 114.8 258 31.4
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.9e-23 114.8 264 31.4
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.4e-23 114.4 246 32.1
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 3.2e-23 114.0 126 47.6
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 4.2e-23 113.6 250 32.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 5.5e-23 113.2 247 35.6
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 7.1e-23 112.8 269 32.7
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 9.3e-23 112.5 213 36.6
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 9.3e-23 112.5 213 36.6
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.3e-23 112.5 268 31.0
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.3e-23 112.5 268 31.0
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.2e-22 112.1 252 32.9
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.6e-22 111.7 249 33.7
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.6e-22 111.7 272 29.4
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 2.1e-22 111.3 304 28.3
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.7e-22 110.9 107 49.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.5e-22 110.5 254 33.5
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.5e-22 110.5 108 50.9
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 3.5e-22 110.5 293 29.4
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 6.0e-22 109.8 158 36.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.3e-21 108.6 254 31.9
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.3e-21 108.6 254 31.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.3e-21 108.6 107 55.1
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.0e-21 107.5 239 33.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 5.1e-21 106.7 96 53.1
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 8.7e-21 105.9 217 34.6
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.5e-20 105.1 246 32.5
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.5e-20 105.1 227 32.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.3e-20 104.0 115 47.0
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 7.4e-20 102.8 78 57.7
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.4e-18 97.8 66 60.6
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 4.0e-18 97.1 65 64.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.4e-17 94.0 109 45.0
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.2e-16 91.3 250 31.2
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.9e-16 90.9 108 46.3
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.4e-15 88.6 107 43.0
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 4.6e-14 83.6 113 41.6
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.8e-13 81.6 90 42.2
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.5e-12 78.6 56 62.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.3e-12 77.4 354 23.4
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.4e-10 72.0 68 51.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.1e-10 70.5 80 43.8
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.3e-10 70.1 79 41.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.0e-09 68.2 152 32.2
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 1.0e-08 65.9 53 58.5
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.5e-07 61.2 64 48.4
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.7e-06 57.8 43 65.1


User provided reference genes

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