Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.0e-200 703.4 389 100.0
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 6.5e-192 674.1 389 93.3
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.6e-182 642.9 394 89.6
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.1e-170 603.6 394 85.0
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.5e-167 593.2 394 83.2
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 6.1e-166 587.8 394 82.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 1.4e-165 586.6 394 81.0
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 2.3e-165 585.9 394 82.2
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 8.8e-165 583.9 394 82.2
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.2e-164 583.6 394 82.5
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.6e-164 582.4 394 81.0
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.4e-164 582.0 394 82.7
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.3e-163 580.1 394 82.2
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.7e-163 579.7 394 82.0
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.7e-163 579.7 394 81.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.2e-163 579.3 394 81.7
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.8e-163 578.9 394 81.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 4.8e-163 578.2 393 80.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.4e-162 576.6 394 79.4
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.8e-162 576.2 394 80.2
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.1e-162 575.1 394 80.7
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.1e-162 575.1 394 80.7
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 4.1e-162 575.1 394 79.7
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 9.1e-162 573.9 394 80.5
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.7e-161 572.4 394 81.0
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.7e-161 572.4 410 79.8
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.7e-161 570.9 394 80.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.7e-161 570.9 394 80.2
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 7.7e-161 570.9 394 80.5
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 80.5
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.9e-160 568.9 394 81.0
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.5e-160 567.8 394 79.9
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 3.2e-159 565.5 394 79.7
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.1e-158 562.8 395 80.5
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 3.6e-158 562.0 397 80.1
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.0e-156 556.2 370 83.8
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 78.4
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 9.8e-156 553.9 394 78.4
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.7e-155 553.1 394 77.7
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 1.7e-155 553.1 394 78.2
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 3.7e-155 552.0 390 76.9
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 4.8e-155 551.6 392 78.6
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.1e-154 550.4 395 78.2
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.8e-154 549.7 394 75.6
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 3.1e-154 548.9 394 77.7
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 4.1e-154 548.5 394 77.7
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 9.1e-154 547.4 393 72.3
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 2.7e-153 545.8 389 77.1
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 5.9e-153 544.7 394 73.4
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.0e-152 543.9 393 71.8
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.7e-152 543.1 395 71.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.3e-152 542.7 438 71.0
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 2.9e-152 542.3 370 82.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 5.0e-152 541.6 393 71.2
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 5.0e-152 541.6 394 75.1
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 3.3e-151 538.9 393 71.2
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 9.5e-151 537.3 392 69.9
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.6e-150 536.6 394 73.1
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.1e-150 536.2 404 75.7
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.0e-149 533.9 393 76.3
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.0e-149 533.9 378 77.2
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.8e-149 533.1 393 72.3
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.8e-149 533.1 417 73.1
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.2e-147 526.2 389 77.1
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.8e-147 525.8 394 67.3
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 3.7e-147 525.4 395 76.2
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 4.9e-147 525.0 394 75.4
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 6.3e-147 524.6 395 76.2
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.1e-146 523.9 394 69.8
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.8e-146 523.1 393 70.2
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 5.4e-146 521.5 393 69.7
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 3.5e-145 518.8 393 69.7
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 3.5e-145 518.8 393 69.7
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 5.9e-145 518.1 398 69.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.0e-144 517.3 393 66.9
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.7e-144 516.5 394 75.1
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.9e-144 515.4 394 74.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 5.0e-144 515.0 390 75.4
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 2.8e-142 509.2 395 72.7
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 8.0e-142 507.7 395 72.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 6.8e-141 504.6 377 70.0
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.1e-138 497.3 389 73.5
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 7.8e-137 491.1 403 71.5
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.0e-136 490.7 394 72.3
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 3.0e-136 489.2 405 69.6
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 8.6e-136 487.6 389 72.5
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 3.3e-135 485.7 393 70.5
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.6e-134 483.4 426 67.1
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.0e-132 476.5 358 70.4
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.7e-131 473.4 395 68.4
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 4.9e-131 471.9 393 68.2
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.1e-129 466.5 387 63.0
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.1e-129 466.5 401 67.8
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.0e-128 462.6 402 61.7
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.4e-122 443.7 394 68.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.7e-120 436.8 365 71.2
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 6.0e-113 411.8 371 61.5
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 6.6e-112 408.3 394 55.3
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.3e-104 384.0 341 69.2
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 3.0e-104 382.9 389 57.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 2.9e-99 366.3 389 51.9
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 8.7e-96 354.8 287 73.2
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.6e-92 343.2 395 50.1
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 3.4e-92 342.8 394 48.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 2.5e-90 336.7 326 66.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.3e-86 324.3 247 68.0
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.1e-81 305.4 295 56.9
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 6.9e-77 292.0 373 47.7
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.5e-74 283.5 391 55.0
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 5.9e-68 262.3 302 52.0
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.8e-64 250.8 182 69.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-63 248.1 182 69.2
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 1.6e-57 227.6 287 48.8
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 3.5e-52 209.9 151 74.8
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 3.5e-52 209.9 539 31.4
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 9.4e-50 201.8 122 82.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.8e-48 197.6 165 61.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 4.8e-46 189.5 417 31.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 4.5e-44 183.0 125 75.2
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 5.9e-44 182.6 214 52.3
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 5.5e-42 176.0 408 33.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.9e-38 162.9 166 53.0
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 4.1e-37 159.8 392 30.9
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 5.6e-34 149.4 92 78.3
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 5.2e-32 142.9 128 57.8
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.2e-30 137.5 125 63.2
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.9e-30 137.1 71 83.1
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.1e-29 135.2 88 78.4
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-26 125.2 81 79.0
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.5e-26 124.8 148 44.6
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.2e-25 121.7 88 68.2
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.0e-24 118.6 151 45.7
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.4e-24 118.2 107 57.9
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 3.1e-24 117.1 130 63.8
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 5.2e-24 116.3 137 48.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.6e-17 94.7 50 76.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 2.1e-17 94.4 80 65.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.0e-15 87.8 49 69.4
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 2.2e-14 84.3 112 45.5
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.1e-12 77.8 51 76.5
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 6.0e-12 76.3 46 80.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.5e-10 71.6 44 79.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 2.5e-10 70.9 51 62.7
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 9.5e-10 68.9 38 86.8
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 2.3e-08 64.3 35 88.6


User provided reference genes

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