Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 5.3e-60 234.2 121 100.0
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 5.2e-55 217.6 122 94.3
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 2.0e-54 215.7 118 96.6
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 2.6e-54 215.3 122 93.4
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 4.8e-45 184.5 99 98.0
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.1e-44 183.3 99 97.0
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 1.8e-44 182.6 99 97.0
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 9.1e-44 180.3 99 96.0
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.2e-43 179.9 99 94.9
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 1.3e-42 176.4 99 92.9
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 6.5e-42 174.1 99 90.9
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 1.2e-40 169.9 99 88.9
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 4.7e-40 167.9 99 86.9
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.4e-39 166.4 99 86.9
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 2.3e-39 165.6 98 84.7
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 2.3e-39 165.6 98 84.7
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 3.0e-39 165.2 99 86.9
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 5.2e-39 164.5 97 86.6
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 6.8e-39 164.1 99 85.9
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.2e-38 163.3 97 87.6
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.2e-38 163.3 97 87.6
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.2e-38 163.3 97 87.6
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.5e-38 162.9 97 86.6
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 2.6e-38 162.2 99 83.8
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 4.4e-38 161.4 99 82.8
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 4.4e-38 161.4 97 86.6
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 4.4e-38 161.4 97 86.6
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 7.5e-38 160.6 97 85.6
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 9.8e-38 160.2 99 82.8
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 9.8e-38 160.2 97 85.6
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 1.7e-37 159.5 90 95.6
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 4.9e-37 157.9 99 82.8
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 4.9e-37 157.9 99 83.8
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 8.3e-37 157.1 97 84.5
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 8.3e-37 157.1 97 84.5
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 7.0e-36 154.1 97 83.5
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 7.0e-36 154.1 94 83.0
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 9.2e-36 153.7 97 80.4
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.6e-35 152.9 97 80.4
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 1.6e-35 152.9 97 81.4
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 2.0e-35 152.5 97 82.5
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 2.7e-35 152.1 97 80.4
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.7e-35 152.1 105 79.0
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 3.5e-35 151.8 98 77.6
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 3.5e-35 151.8 98 81.6
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 3.5e-35 151.8 93 84.9
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 4.5e-35 151.4 97 80.4
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 5.9e-35 151.0 97 79.4
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 7.8e-35 150.6 97 80.4
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 7.8e-35 150.6 93 83.9
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 7.8e-35 150.6 93 83.9
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 7.8e-35 150.6 97 78.4
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 7.8e-35 150.6 97 79.4
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.0e-34 150.2 97 79.4
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 1.0e-34 150.2 97 81.4
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.0e-34 150.2 97 79.4
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 1.3e-34 149.8 97 78.4
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-34 149.8 97 78.4
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 1.3e-34 149.8 97 78.4
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 1.3e-34 149.8 99 79.8
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.7e-34 149.4 97 78.4
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.7e-34 149.4 97 78.4
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 2.3e-34 149.1 97 79.4
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 2.9e-34 148.7 97 77.3
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 2.9e-34 148.7 97 78.4
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 3.8e-34 148.3 97 78.4
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 77.3
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 77.3
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 77.3
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 77.3
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 77.3
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 77.3
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 80.4
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 5.0e-34 147.9 97 80.4
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 6.6e-34 147.5 96 78.1
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 6.6e-34 147.5 96 79.2
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 6.6e-34 147.5 97 78.4
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 1.1e-33 146.7 96 77.1
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 1.1e-33 146.7 97 75.3
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 1.1e-33 146.7 97 75.3
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 1.5e-33 146.4 97 76.3
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.9e-33 146.0 97 76.3
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 2.5e-33 145.6 103 75.7
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 4.3e-33 144.8 97 78.4
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 5.6e-33 144.4 97 77.3
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 5.6e-33 144.4 97 77.3
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 5.6e-33 144.4 94 78.7
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 7.3e-33 144.1 90 85.6
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 7.3e-33 144.1 97 77.3
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 9.5e-33 143.7 88 86.4
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.2e-32 143.3 97 77.3
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.6e-32 142.9 96 79.2
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.6e-32 142.9 97 77.3
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.8e-32 142.1 97 75.3
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 3.6e-32 141.7 97 74.2
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 4.7e-32 141.4 97 75.3
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 4.7e-32 141.4 97 76.3
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 4.7e-32 141.4 97 78.4
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 6.1e-32 141.0 97 73.2
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.4e-31 139.8 97 73.2
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.4e-31 139.8 97 73.2
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.0e-31 138.7 99 72.7
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 3.0e-31 138.7 100 73.0
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 5.2e-31 137.9 97 72.2
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.5e-30 136.3 99 71.7
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 2.0e-30 136.0 99 71.7
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.0e-30 136.0 99 71.7
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 3.4e-30 135.2 99 68.7
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.7e-29 132.9 142 57.0
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 3.7e-29 131.7 91 74.7
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 4.9e-29 131.3 96 70.8
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 6.4e-29 131.0 94 73.4
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 4.1e-28 128.3 99 68.7
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 5.4e-28 127.9 79 83.5
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 5.4e-28 127.9 96 68.8
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 2.7e-27 125.6 87 75.9
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 4.6e-27 124.8 97 64.9
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 1.0e-26 123.6 97 72.2
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 3.3e-25 118.6 97 64.9
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 4.3e-25 118.2 95 65.3
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 7.3e-25 117.5 97 63.9
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 7.3e-25 117.5 95 62.1
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.6e-24 116.3 96 65.6
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 1.4e-23 113.2 96 60.4
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.4e-23 113.2 97 59.8
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 1.8e-23 112.8 96 62.5
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 2.3e-23 112.5 95 63.2
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 2.3e-23 112.5 97 59.8
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 6.8e-23 110.9 97 58.8
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 6.8e-23 110.9 68 77.9
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 8.9e-23 110.5 70 82.9
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.2e-22 110.2 68 85.3
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.0e-22 109.4 96 58.3
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.4e-22 108.6 114 58.8
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 4.4e-22 108.2 90 65.6
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.3e-21 106.7 68 85.3
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 3.7e-21 105.1 98 65.3
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.1e-20 103.6 65 84.6
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 1.4e-20 103.2 74 66.2
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 4.1e-20 101.7 68 77.9
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.6e-19 99.8 97 63.9
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 3.5e-19 98.6 99 53.5
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.0e-18 97.1 119 52.9
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 1.3e-18 96.7 74 64.9
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 1.3e-18 96.7 96 53.1
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 3.0e-18 95.5 95 53.7
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.0e-18 95.5 115 54.8
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.6e-17 91.3 103 57.3
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 7.3e-17 90.9 91 62.6
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 9.5e-17 90.5 65 67.7
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 2.1e-16 89.4 75 57.3
TAR406G0002 Trochodendron aralioides HOM05D003159 ORTHO05D003780 8.6e-10 67.4 69 56.5
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.1e-09 67.0 40 87.5
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 3.4e-06 55.5 32 93.8
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 5.8e-06 54.7 33 87.9
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 7.6e-06 54.3 32 90.6
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 9.9e-06 53.9 33 84.8


User provided reference genes

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