Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0010800 Salix brachista HOM05D003223 ORTHO05D033830 1.0e-179 633.3 318 100.0
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 2.0e-159 565.8 330 90.0
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 2.4e-128 462.6 330 77.3
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 2.8e-124 449.1 331 73.4
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 4.1e-120 435.3 330 72.4
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 4.7e-108 395.2 327 65.4
GSVIVG01000234001 Vitis vinifera HOM05D003223 ORTHO05D004865 8.1e-108 394.4 329 65.3
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 1.4e-107 393.7 327 65.1
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 1.8e-107 393.3 326 65.0
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 2.4e-107 392.9 326 65.0
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 4.0e-107 392.1 327 65.7
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 4.0e-107 392.1 327 64.8
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 6.9e-107 391.3 326 64.7
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 6.9e-107 391.3 329 64.7
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 9.0e-107 391.0 328 63.7
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 9.0e-107 391.0 327 64.8
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 9.0e-107 391.0 326 64.4
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 1.2e-106 390.6 308 66.9
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 1.2e-106 390.6 327 65.4
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 4.4e-106 388.7 330 63.6
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 4.4e-106 388.7 329 64.1
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 7.6e-106 387.9 330 64.5
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 9.9e-106 387.5 330 63.9
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 9.9e-106 387.5 329 64.1
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 2.9e-105 386.0 326 63.8
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 2.9e-105 386.0 326 65.3
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 8.4e-105 384.4 330 63.3
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 1.9e-104 383.3 329 62.9
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 2.4e-104 382.9 327 64.5
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 4.2e-104 382.1 329 63.2
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 4.2e-104 382.1 327 63.0
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 5.4e-104 381.7 329 62.3
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 5.4e-104 381.7 330 62.7
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 7.1e-104 381.3 327 64.5
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 7.1e-104 381.3 326 62.6
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 7.1e-104 381.3 327 64.8
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 9.3e-104 380.9 333 62.8
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 1.6e-103 380.2 326 63.5
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 2.1e-103 379.8 327 63.9
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 6.0e-103 378.3 327 63.0
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 6.0e-103 378.3 369 57.7
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 6.0e-103 378.3 337 61.4
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 1.3e-102 377.1 327 62.7
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 1.3e-102 377.1 336 61.9
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 3.0e-102 375.9 327 63.6
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 3.9e-102 375.6 327 62.7
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 3.9e-102 375.6 326 63.2
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 5.1e-102 375.2 329 63.2
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 8.7e-102 374.4 327 63.0
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 1.1e-101 374.0 330 61.5
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 1.1e-101 374.0 327 63.0
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 1.5e-101 373.6 328 61.6
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 1.5e-101 373.6 328 61.3
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 1.5e-101 373.6 327 63.3
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 1.9e-101 373.2 327 63.3
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.5e-101 372.9 327 61.8
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 3.3e-101 372.5 327 62.7
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 4.3e-101 372.1 327 63.0
SalBow7G2948 Salvia bowleyana HOM05D003223 ORTHO05D004865 4.3e-101 372.1 327 62.4
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 5.6e-101 371.7 327 62.4
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 5.6e-101 371.7 327 61.2
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 5.6e-101 371.7 327 62.4
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 5.6e-101 371.7 326 62.0
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 9.6e-101 370.9 330 60.6
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 9.6e-101 370.9 327 63.3
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 1.3e-100 370.5 327 62.1
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 1.6e-100 370.2 327 61.2
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 2.1e-100 369.8 327 63.0
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 3.6e-100 369.0 327 59.3
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 1.4e-99 367.1 327 62.4
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 1.4e-99 367.1 327 61.2
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.1e-99 365.9 327 58.4
SGA_v2.0_scaffold2G01007 Striga asiatica HOM05D003223 ORTHO05D004865 3.1e-99 365.9 330 60.9
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 4.0e-99 365.5 327 61.5
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 4.0e-99 365.5 327 61.5
Oeu024851.1 Olea europaea HOM05D003223 ORTHO05D004865 5.3e-99 365.2 327 61.8
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 6.9e-99 364.8 327 61.2
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 9.0e-99 364.4 327 61.8
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 1.2e-98 364.0 327 60.9
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 2.6e-98 362.8 327 59.0
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 5.8e-98 361.7 330 59.1
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 7.6e-98 361.3 327 60.9
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 1.7e-97 360.1 327 61.2
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.7e-97 360.1 327 60.9
ATR0064G028 Amborella trichopoda HOM05D003223 ORTHO05D004865 2.2e-97 359.8 330 61.8
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 3.8e-97 359.0 327 61.2
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 3.8e-97 359.0 331 60.7
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 4.9e-97 358.6 327 61.2
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 4.9e-97 358.6 361 55.1
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 6.4e-97 358.2 327 61.2
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.4e-96 357.1 327 60.9
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 1.9e-96 356.7 356 56.5
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 1.9e-96 356.7 327 61.2
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 1.9e-96 356.7 331 61.0
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 2.4e-96 356.3 327 61.2
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 2.4e-96 356.3 327 61.2
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 2.4e-96 356.3 327 60.6
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 3.2e-96 355.9 342 59.4
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 9.3e-96 354.4 327 59.9
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 2.7e-95 352.8 327 60.6
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 6.0e-95 351.7 327 60.6
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 1.3e-94 350.5 327 58.4
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.3e-94 350.5 329 59.3
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 2.3e-94 349.7 327 58.4
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 1.1e-93 347.4 327 59.6
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 5.3e-91 338.6 315 59.4
SEGI_11553 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 6.9e-91 338.2 329 58.4
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 6.4e-89 331.6 344 54.7
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 9.3e-88 327.8 327 56.6
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 4.3e-85 318.9 303 57.1
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 4.0e-83 312.4 302 61.3
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.5e-79 299.3 332 53.3
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 1.3e-78 297.4 328 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 3.9e-78 295.8 324 51.5
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 2.6e-74 283.1 309 53.7
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 1.0e-73 281.2 335 49.0
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.1e-72 277.7 259 60.2
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 1.4e-70 270.8 340 46.5
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 4.3e-69 265.8 201 71.6
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 3.7e-68 262.7 309 51.8
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 1.4e-64 250.8 281 52.7
Sabra19G0010200 Salix brachista HOM05D003223 ORTHO05D014735 9.4e-64 248.1 133 94.0
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.4e-59 234.2 243 56.0
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 7.7e-58 228.4 308 48.4
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 1.1e-53 214.5 125 86.4
Sabra19G0010100 Salix brachista HOM05D003223 ORTHO05D014735 2.2e-52 210.3 297 49.2
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 8.8e-46 188.3 210 51.4
Cpa.g.sc170.64 Carica papaya HOM05D003223 ORTHO05D014735 7.0e-43 178.7 161 57.8
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 2.7e-42 176.8 331 37.5
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 2.4e-35 153.7 278 38.5
BcaC06g36382 Brassica carinata HOM05D003223 ORTHO05D014735 5.9e-34 149.1 159 49.7
Sabra19G0010700 Salix brachista HOM05D003223 ORTHO05D033830 4.2e-32 142.9 73 97.3
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 2.3e-30 137.1 89 78.7
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 2.0e-29 134.0 194 42.3
Dinv04531 Davidia involucrata HOM05D003223 ORTHO05D014735 7.0e-27 125.6 81 65.4
A02p33360 Brassica napus HOM05D003223 ORTHO05D014735 1.5e-24 117.9 81 64.2
A09p59140 Brassica napus HOM05D003223 ORTHO05D014735 1.5e-24 117.9 81 64.2
BraA03t12952Z Brassica rapa HOM05D003223 ORTHO05D014735 1.5e-24 117.9 81 64.2
BraA08t32416Z Brassica rapa HOM05D003223 ORTHO05D014735 1.5e-24 117.9 81 64.2
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 7.3e-24 115.5 96 68.8
Actinidia26636 Actinidia chinensis HOM05D003223 ORTHO05D014735 9.5e-24 115.2 84 64.3
MCO03G244 Micromonas commoda HOM05D003223 ORTHO05D004865 9.5e-24 115.2 135 47.4
CDE04G0779 Ceratophyllum demersum HOM05D003223 ORTHO05D014735 3.6e-23 113.2 85 58.8
MCO16G616 Micromonas commoda HOM05D003223 ORTHO05D004865 2.9e-20 103.6 292 31.2
PRCOL_00006825 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 2.0e-18 97.4 273 30.4
BolC7t40871H Brassica oleracea HOM05D003223 ORTHO05D033830 5.6e-16 89.4 63 71.4
PRCOL_00004888 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 4.7e-15 86.3 369 27.4
Sabra19G0000900 Salix brachista HOM05D003223 ORTHO05D349924 5.8e-13 79.3 49 83.7
Cfa024590 Carpinus fangiana HOM05D003223 ORTHO05D014810 1.4e-06 58.2 136 32.4


User provided reference genes

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