Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 4.3e-311 1070.5 529 100.0
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.1e-287 992.6 529 92.6
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.4e-282 975.7 529 90.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.2e-275 951.8 534 88.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.3e-272 941.8 530 87.4
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 8.6e-272 939.9 530 87.4
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.3e-271 937.9 530 87.2
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.6e-271 937.2 530 86.8
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 7.3e-271 936.8 530 86.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.6e-270 934.5 530 87.0
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 4.7e-270 934.1 530 86.4
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.3e-269 931.8 529 86.2
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.1e-269 931.4 530 86.4
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 8.9e-269 929.9 530 85.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.0e-268 928.7 541 84.1
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.6e-268 928.3 529 86.6
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 4.4e-268 927.5 514 88.5
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 7.5e-268 926.8 507 89.3
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 9.8e-268 926.4 532 85.5
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.3e-267 926.0 529 85.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.7e-267 925.6 534 85.6
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.4e-267 923.7 529 85.8
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 6.4e-267 923.7 531 85.1
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.9e-266 922.2 529 85.3
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.9e-266 922.2 513 88.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.4e-266 921.8 529 85.3
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 3.2e-266 921.4 535 85.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 3.2e-266 921.4 535 84.9
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 3.2e-266 921.4 540 84.4
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.1e-266 921.0 530 86.4
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.1e-266 921.0 530 86.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 7.1e-266 920.2 534 84.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 7.1e-266 920.2 540 84.4
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.1e-265 918.7 527 86.1
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.5e-265 917.9 518 87.1
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.6e-265 917.5 534 84.3
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 6.6e-264 913.7 539 83.7
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.5e-263 912.5 529 85.1
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 3.3e-263 911.4 508 88.0
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 3.3e-263 911.4 517 86.7
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.3e-263 911.4 526 85.2
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 5.6e-263 910.6 540 83.7
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.1e-262 908.7 528 84.1
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.8e-262 908.3 537 83.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.8e-262 908.3 537 83.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.8e-262 908.3 532 84.2
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.6e-262 907.9 527 83.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.7e-262 907.5 535 83.2
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.7e-262 907.5 535 83.6
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 8.1e-262 906.7 537 83.6
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-261 906.4 536 83.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.0e-261 904.4 537 82.5
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.2e-261 904.0 550 81.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 5.2e-261 904.0 563 80.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 8.9e-261 903.3 574 79.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 8.9e-261 903.3 508 86.2
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 8.9e-261 903.3 529 83.0
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.2e-260 902.9 529 84.7
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-260 902.9 533 83.1
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 3.4e-260 901.4 519 86.3
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 3.4e-260 901.4 508 87.2
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 4.4e-260 901.0 533 82.9
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.6e-260 900.2 529 83.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 7.6e-260 900.2 529 82.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 7.6e-260 900.2 529 82.6
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.2e-259 898.7 536 82.1
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.2e-259 898.7 537 83.1
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.9e-259 897.5 529 83.4
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.4e-259 897.1 528 82.6
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.4e-258 896.0 529 82.0
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.9e-258 895.6 513 84.0
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.4e-258 894.0 532 82.9
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 7.1e-258 893.6 525 84.0
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 9.2e-258 893.3 533 82.0
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 9.2e-258 893.3 533 82.0
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-257 892.9 533 82.2
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-257 892.9 533 82.2
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.2e-257 892.9 537 81.4
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.6e-257 892.5 533 82.2
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.6e-257 892.5 532 82.5
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 2.3e-256 888.6 519 84.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.1e-255 886.3 536 80.4
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.5e-255 885.2 530 81.3
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.3e-255 884.8 531 80.8
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.3e-255 884.8 535 80.9
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.3e-255 884.4 534 81.3
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 5.6e-255 884.0 508 84.8
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 7.3e-255 883.6 532 82.1
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.1e-254 882.1 532 82.0
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.8e-254 881.7 541 80.8
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 4.7e-254 880.9 525 82.3
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 4.0e-253 877.9 531 79.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 5.2e-253 877.5 534 82.0
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 7.6e-252 873.6 533 81.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.2e-249 866.3 533 80.3
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.5e-249 864.8 540 78.7
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.8e-249 863.6 531 78.9
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 7.8e-249 863.6 529 80.5
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.9e-247 859.0 514 80.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-246 856.3 522 77.8
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.8e-245 852.4 520 78.8
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.9e-244 846.7 530 78.5
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.9e-244 846.7 530 78.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 5.4e-242 840.9 528 75.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 5.6e-239 830.9 537 74.1
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.3e-238 829.7 529 76.7
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 2.0e-236 822.4 573 72.4
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.4e-236 821.6 530 77.0
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 8.7e-232 807.0 537 72.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 3.5e-225 785.0 529 71.3
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.0e-224 783.5 530 71.3
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.9e-223 779.2 482 82.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.3e-221 771.2 508 72.0
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.7e-219 766.1 516 70.7
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.0e-219 764.6 515 69.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 2.5e-218 762.3 529 75.0
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.6e-217 759.6 516 70.0
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.6e-217 758.1 529 68.4
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.2e-212 743.4 529 67.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.9e-212 741.1 533 72.4
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.1e-210 736.9 534 71.3
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.8e-205 719.5 522 67.2
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.2e-204 716.8 421 83.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.1e-202 710.3 535 69.5
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.7e-195 686.4 500 64.6
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.6e-193 679.9 388 86.6
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.5e-183 646.7 543 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 9.8e-183 644.0 513 62.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.3e-182 643.7 428 78.0
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 4.1e-181 638.6 344 91.9
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.9e-178 629.8 343 89.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.1e-157 560.8 527 56.7
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-154 550.8 354 77.4
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.7e-150 537.0 500 52.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.3e-142 510.8 299 81.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.6e-140 502.3 298 80.5
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.1e-138 497.7 274 89.8
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 4.6e-132 475.7 519 48.9
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.8e-132 474.9 365 68.5
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.4e-125 453.4 511 47.9
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.8e-120 437.2 284 77.5
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 3.9e-91 339.7 202 81.2
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.6e-79 301.2 418 39.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.4e-58 230.3 422 38.6
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 4.4e-58 229.9 334 42.2
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.7e-44 183.3 120 70.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 9.2e-40 169.1 93 86.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.7e-31 141.0 79 83.5
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 6.8e-27 126.3 93 61.3
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 3.2e-24 117.5 68 77.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 5.3e-19 100.1 76 61.8
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 9.3e-16 89.4 72 63.9
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 6.2e-12 76.6 49 67.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.6e-10 71.2 125 39.2
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.8e-09 67.4 36 83.3


User provided reference genes

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