Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.0e-243 846.3 412 100.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.0e-243 846.3 412 100.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.7e-225 784.3 405 92.8
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 8.6e-211 736.9 412 85.7
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.1e-205 718.0 399 85.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 6.6e-195 684.1 411 78.3
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.2e-191 673.3 407 78.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 4.9e-190 667.9 404 78.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.7e-188 662.1 407 77.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.5e-188 661.8 398 78.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 3.5e-188 661.8 413 74.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.9e-187 658.3 411 75.9
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-184 650.2 404 76.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.1e-181 640.2 400 75.0
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.4e-181 639.8 400 74.8
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.9e-181 639.4 400 75.2
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.2e-181 638.6 404 74.0
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.2e-181 638.6 400 75.0
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.4e-181 637.9 401 76.1
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.1e-181 637.5 402 74.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.7e-180 635.6 401 75.8
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.5e-180 635.2 404 73.3
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.8e-179 632.9 401 75.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-179 632.5 401 75.1
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-178 630.2 401 74.6
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.1e-177 625.9 401 75.1
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.7e-177 625.2 410 71.7
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.7e-177 625.2 407 73.2
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.1e-176 622.1 401 73.8
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 6.9e-176 620.9 403 73.2
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 3.4e-175 618.6 407 72.0
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 5.8e-175 617.8 407 71.7
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.8e-175 617.8 404 72.3
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 5.8e-175 617.8 399 72.9
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.3e-174 616.7 407 71.7
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.7e-174 616.3 407 71.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.7e-174 616.3 407 71.5
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 2.9e-174 615.5 409 71.1
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 4.9e-174 614.8 419 72.1
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-173 613.6 412 70.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.5e-173 612.5 414 71.5
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 9.3e-173 610.5 407 70.5
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 9.3e-173 610.5 409 71.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.1e-172 609.4 408 70.8
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.5e-172 608.6 401 73.3
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 7.9e-172 607.4 409 69.9
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 3.9e-171 605.1 408 69.6
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 6.7e-171 604.4 408 69.4
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.5e-170 603.2 398 70.4
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 2.8e-169 599.0 408 69.6
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 6.2e-169 597.8 399 71.4
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-168 597.0 398 71.4
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.8e-168 596.3 408 69.1
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.1e-168 595.5 407 69.5
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.1e-168 595.5 384 73.2
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.2e-166 589.3 402 68.7
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 5.0e-166 588.2 403 68.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 8.4e-166 587.4 400 71.0
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.1e-165 587.0 411 67.6
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.5e-164 582.0 403 68.5
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.3e-163 580.1 406 68.5
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.3e-163 580.1 400 66.2
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 3.9e-163 578.6 407 68.6
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.3e-162 575.5 390 69.5
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 4.3e-162 575.1 407 64.4
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 7.4e-162 574.3 406 65.8
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-161 573.5 407 67.1
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.8e-160 569.7 404 66.3
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 5.3e-160 568.2 406 67.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 9.0e-160 567.4 387 68.7
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.5e-159 566.6 414 66.4
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.4e-159 565.5 393 66.9
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 5.9e-159 564.7 408 65.2
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 7.7e-159 564.3 403 69.0
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.7e-158 563.1 393 66.4
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.9e-158 562.4 398 67.3
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.8e-158 562.0 387 69.0
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.1e-157 560.5 406 64.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.9e-157 559.7 405 66.9
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.8e-155 553.1 411 63.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 2.3e-155 552.7 388 67.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 3.9e-155 552.0 406 63.8
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 4.3e-154 548.5 391 67.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 4.3e-154 548.5 403 63.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 9.7e-154 547.4 406 62.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-153 547.0 386 66.8
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-153 547.0 386 66.8
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.7e-153 546.6 392 65.1
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.1e-152 543.9 407 63.6
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.1e-152 542.3 394 64.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 9.1e-152 540.8 383 65.0
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.6e-151 539.3 387 63.8
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 5.5e-149 531.6 416 60.8
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.4e-149 530.8 401 63.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 9.4e-149 530.8 398 63.3
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.2e-148 530.4 407 62.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-148 530.4 403 63.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 2.7e-148 529.3 402 60.2
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 6.1e-148 528.1 387 62.8
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.4e-147 526.9 411 61.3
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.8e-147 526.6 414 59.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.8e-147 526.6 383 62.9
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.3e-147 526.2 402 61.4
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.1e-146 523.9 399 61.4
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 4.4e-146 521.9 390 61.5
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 5.7e-146 521.5 383 63.7
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 7.4e-146 521.2 390 61.5
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.2e-145 519.6 399 61.4
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.8e-145 519.2 388 61.3
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.2e-145 517.7 377 64.7
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.2e-145 517.7 377 64.7
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.4e-144 516.2 398 61.1
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.7e-140 501.9 391 60.9
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.6e-138 496.1 414 58.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.7e-137 492.3 387 59.4
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.0e-135 486.5 394 57.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.5e-133 480.3 414 59.2
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-132 475.3 392 58.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.4e-128 463.8 413 56.7
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-125 454.1 388 55.2
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 9.1e-120 434.5 409 50.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.0e-118 431.0 401 53.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.5e-117 427.2 402 54.0
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 9.8e-114 414.5 402 54.5
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.1e-112 411.0 408 49.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-111 406.8 399 53.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 2.4e-104 383.3 404 47.8
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.1e-104 382.5 404 52.0
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.0e-104 381.7 375 51.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 3.0e-102 376.3 403 49.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 8.1e-100 368.2 408 46.6
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.4e-96 356.7 403 45.2
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 4.6e-95 352.4 407 48.4
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 7.3e-93 345.1 397 45.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.3e-93 345.1 404 46.3
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.7e-86 323.9 405 44.7
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.3e-86 323.6 258 60.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.5e-85 320.1 405 45.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.2e-80 303.1 398 44.2
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 3.3e-77 293.1 408 43.6
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.6e-77 291.6 228 63.2
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.1e-75 288.1 395 41.8
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 7.1e-64 248.8 156 69.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.0e-62 243.4 186 61.3
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.2e-56 223.4 428 33.2
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 6.5e-41 172.6 154 55.8
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.4e-34 150.2 119 58.0
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.1e-32 145.2 392 26.5
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-31 139.8 96 70.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.7e-28 130.2 318 28.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.7e-25 121.3 78 69.2
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 6.3e-20 102.8 410 27.3
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.8e-11 74.7 40 87.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-08 65.5 47 57.4
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 5.5e-08 63.2 58 50.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.8e-06 58.2 42 69.0


User provided reference genes

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