Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 3.8e-258 894.4 488 100.0
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 2.0e-238 828.9 488 87.7
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 7.4e-169 597.8 490 63.9
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 9.0e-167 590.9 489 69.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 3.2e-164 582.4 492 65.2
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 5.1e-162 575.1 491 65.2
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 3.3e-161 572.4 488 62.3
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 2.2e-160 569.7 486 67.9
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 5.3e-159 565.1 475 64.6
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 9.1e-159 564.3 489 62.4
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 1.2e-158 563.9 486 67.5
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.0e-157 560.8 489 62.6
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 4.2e-156 555.4 493 62.5
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 3.0e-154 549.3 486 61.3
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.6e-153 546.2 488 59.8
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.3e-152 543.9 488 60.2
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.8e-152 542.7 488 59.4
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.2e-152 541.2 487 60.2
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.4e-151 540.4 491 64.2
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 2.4e-151 539.7 490 61.4
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 7.0e-151 538.1 483 60.5
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 6.5e-149 531.6 485 63.5
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.1e-148 530.8 489 63.2
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-148 530.0 489 62.4
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 2.5e-148 529.6 492 60.4
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.6e-147 526.9 490 59.4
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 2.1e-147 526.6 489 62.4
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 9.1e-143 511.1 491 62.3
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.2e-137 494.2 489 55.8
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 1.4e-135 487.3 493 58.6
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 4.5e-134 482.3 488 55.5
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 9.5e-132 474.6 487 53.8
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.0e-130 469.2 506 52.6
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.0e-130 469.2 506 52.6
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 5.2e-130 468.8 497 58.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 8.8e-130 468.0 487 55.2
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 3.4e-129 466.1 488 54.5
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 3.1e-127 459.5 499 54.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 7.0e-127 458.4 492 57.9
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.6e-126 457.2 487 51.7
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 5.9e-126 455.3 496 53.6
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-125 454.1 371 64.7
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.3e-125 453.4 489 53.8
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 3.8e-125 452.6 491 56.4
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 9.5e-124 448.0 492 51.6
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.6e-123 447.2 492 54.9
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.7e-123 445.7 479 55.9
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 4.0e-122 442.6 491 51.7
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 4.0e-122 442.6 497 53.5
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.4e-121 439.5 491 54.8
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 7.5e-121 438.3 499 51.9
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.3e-120 437.6 488 53.1
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 3.7e-120 436.0 495 51.7
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 6.4e-120 435.3 486 51.4
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.2e-118 431.0 495 53.7
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-117 427.9 432 55.3
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.3e-117 427.6 487 51.7
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 5.0e-117 425.6 497 54.7
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.9e-116 423.7 497 52.7
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 7.3e-116 421.8 490 54.9
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.2e-115 421.0 486 54.9
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.6e-113 413.3 497 50.9
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 5.8e-113 412.1 494 51.4
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 6.4e-112 408.7 462 50.9
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.9e-111 407.1 494 48.8
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 2.7e-110 403.3 411 55.5
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-109 400.6 505 51.3
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 3.9e-109 399.4 488 50.8
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 3.9e-109 399.4 496 48.2
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-108 397.1 491 51.7
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 9.5e-108 394.8 495 51.1
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 9.5e-108 394.8 495 51.1
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 2.8e-107 393.3 502 49.6
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 2.6e-105 386.7 309 63.4
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 3.4e-105 386.3 477 47.6
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 7.5e-105 385.2 487 51.5
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.7e-104 384.0 493 48.3
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.2e-104 383.6 496 47.4
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 2.9e-104 383.3 501 46.9
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.7e-104 382.9 487 46.4
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.9e-103 380.6 487 46.2
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 7.1e-103 378.6 492 46.5
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 3.5e-102 376.3 493 51.3
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 6.0e-102 375.6 489 46.4
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.5e-100 370.2 333 58.0
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-100 370.2 497 49.5
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.3e-100 369.8 487 50.7
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 5.6e-100 369.0 492 45.5
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 3.6e-99 366.3 493 45.0
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.8e-98 364.0 489 50.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-97 361.3 491 49.3
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 7.6e-97 358.6 505 45.7
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 3.2e-95 353.2 503 44.1
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.4e-95 352.4 436 49.8
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 7.1e-95 352.1 506 44.9
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 6.6e-93 345.5 418 50.7
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 8.6e-93 345.1 334 55.7
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 8.6e-93 345.1 333 55.9
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.1e-92 344.7 507 42.8
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.5e-92 344.4 487 47.4
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.3e-92 342.8 501 43.3
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.3e-92 342.8 487 47.6
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-91 340.9 484 48.1
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-91 340.5 485 48.2
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 4.7e-91 339.3 507 42.4
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 8.1e-91 338.6 309 64.1
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.9e-90 335.1 496 49.0
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.4e-89 333.2 493 48.5
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.4e-89 333.2 493 48.5
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-86 323.9 289 65.1
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.7e-85 318.5 478 48.5
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.6e-84 315.8 356 55.1
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 7.3e-84 315.5 299 60.2
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 4.8e-83 312.8 490 44.1
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 6.2e-83 312.4 496 42.5
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.3e-80 304.7 488 40.6
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 4.9e-80 302.8 497 41.2
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-78 297.0 486 44.2
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 9.6e-76 288.5 277 60.6
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.9e-74 282.3 491 43.6
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 9.0e-74 282.0 248 66.5
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.0e-74 282.0 341 47.8
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.3e-72 278.1 420 42.9
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.2e-71 273.1 255 57.6
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 9.0e-66 255.4 215 60.9
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.2e-65 255.0 335 47.8
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-65 253.8 298 48.7
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 6.5e-64 249.2 482 36.7
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.4e-57 226.9 301 47.5
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 6.7e-53 212.6 425 36.5
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-47 194.1 241 45.6
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.5e-47 193.0 156 62.2
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.4e-45 188.3 331 42.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.0e-41 174.5 176 52.8
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.7e-38 164.1 293 42.3
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.7e-38 164.1 166 66.3
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-37 161.8 164 66.5
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.2e-37 159.8 176 52.3
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.3e-36 157.1 235 39.6
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.4e-36 156.8 171 52.6
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 2.0e-33 147.9 222 47.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.9e-33 146.4 146 54.1
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 2.6e-28 131.0 122 51.6
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.8e-27 127.5 84 72.6
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.8e-26 124.8 104 57.7
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 9.1e-26 122.5 152 42.8
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.3e-21 107.8 69 73.9
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.8e-20 102.4 117 47.0
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.4e-18 97.8 79 58.2
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.5e-17 94.0 72 65.3
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.2e-10 69.3 86 45.3
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 1.9e-07 61.6 235 28.1
Sed0012643 Sechium edule HOM05D002503 ORTHO05D002810 7.3e-07 59.7 415 23.9
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 7.3e-07 59.7 241 29.9
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 1.2e-06 58.9 221 25.8
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 1.2e-06 58.9 229 28.8
HanXRQChr11g0335231 Helianthus annuus HOM05D002887 ORTHO05D003159 1.2e-06 58.9 273 24.9
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 2.8e-06 57.8 286 23.8
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 2.8e-06 57.8 226 27.9
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 3.6e-06 57.4 206 30.1
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 3.6e-06 57.4 224 26.3
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 6.1e-06 56.6 174 28.2
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 8.0e-06 56.2 225 27.1


User provided reference genes

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