Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 0.0e+00 1778.1 920 100.0
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 0.0e+00 1488.4 964 82.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 0.0e+00 1136.7 1033 63.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 0.0e+00 1134.8 979 65.7
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 4.1e-285 984.9 982 58.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.7e-280 967.6 974 58.3
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.6e-257 893.3 940 56.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.1e-253 879.0 1005 53.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.5e-252 875.2 916 57.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 7.2e-250 867.8 880 57.3
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-248 863.6 949 54.8
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.4e-248 863.6 948 53.8
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.0e-240 837.4 940 53.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.3e-240 836.3 948 53.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.0e-240 835.9 950 52.7
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.5e-239 833.6 945 53.0
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.4e-239 832.4 948 53.4
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 9.8e-239 830.9 948 53.5
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.4e-237 825.1 939 52.6
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.5e-236 822.4 942 52.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 7.8e-236 821.2 939 52.6
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-230 803.9 947 52.0
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-230 803.1 947 52.1
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-230 802.7 952 50.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-229 799.7 947 51.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-228 796.2 927 52.0
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 7.8e-228 794.7 945 51.4
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.8e-228 794.7 954 50.4
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.0e-227 794.3 947 52.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.6e-227 791.6 925 51.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.2e-225 787.3 946 51.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.1e-225 786.6 925 51.6
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-224 784.3 950 50.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.4e-223 778.9 926 51.4
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 9.8e-223 777.7 930 50.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.7e-220 769.6 942 50.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.1e-217 758.1 971 48.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.7e-214 750.4 674 61.9
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.9e-210 736.9 947 48.6
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.7e-209 732.3 921 49.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 9.3e-205 718.0 943 47.8
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 9.3e-205 718.0 941 47.3
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.6e-204 717.2 932 48.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.5e-204 716.1 911 48.5
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.8e-204 714.9 907 48.0
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.7e-203 713.8 924 48.7
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 5.1e-203 712.2 921 48.2
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.5e-202 710.7 937 47.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.3e-202 709.5 949 47.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.3e-202 708.4 907 47.2
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-201 707.6 907 47.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.3e-201 707.6 945 46.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.6e-201 707.2 911 48.6
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.4e-197 692.2 1004 46.7
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 7.1e-197 691.8 912 48.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 6.6e-195 685.3 946 47.3
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.7e-195 684.9 734 55.2
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 8.7e-195 684.9 909 48.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 5.6e-194 682.2 927 48.0
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.6e-193 679.5 929 48.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.1e-193 678.3 959 46.5
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 9.0e-192 674.9 932 46.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.2e-190 670.2 869 47.3
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.2e-189 666.4 905 47.5
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.1e-188 663.7 948 45.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.9e-186 657.1 906 47.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.8e-185 652.5 952 44.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 8.1e-185 651.7 928 45.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.8e-184 650.6 954 45.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-183 647.5 905 47.2
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.6e-183 646.7 887 47.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-182 644.8 884 46.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-182 644.4 922 45.9
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.6e-180 637.5 890 45.7
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.7e-180 636.7 905 46.6
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.9e-179 632.9 1017 43.3
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 5.1e-179 632.5 939 45.2
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.8e-177 626.7 898 45.4
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.1e-176 623.2 910 45.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.6e-175 620.2 824 47.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.5e-175 619.4 954 44.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.4e-173 614.4 609 58.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 9.3e-173 611.7 906 44.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.7e-172 610.1 684 53.8
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.5e-172 609.8 983 42.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.1e-172 609.0 826 46.7
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.0e-171 606.7 863 44.8
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 5.1e-171 605.9 909 45.0
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.7e-171 605.5 937 43.2
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 8.7e-171 605.1 903 44.3
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.7e-171 605.1 865 45.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.5e-170 603.6 902 44.3
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.1e-168 596.7 916 44.5
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.5e-167 592.8 997 42.7
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.2e-165 585.5 933 41.7
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 7.9e-164 582.0 896 43.9
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.3e-158 564.7 899 43.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.5e-158 562.4 872 44.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.1e-157 561.6 960 42.3
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.3e-155 553.9 902 42.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 5.1e-155 552.7 895 42.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.1e-154 551.6 930 42.8
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.0e-154 550.8 922 41.5
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 4.4e-154 549.7 908 41.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.7e-154 549.3 880 43.0
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.6e-151 540.4 848 43.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.6e-148 530.0 858 43.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.8e-147 525.4 968 39.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.7e-146 522.7 855 42.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.0e-142 511.9 697 48.6
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 5.0e-142 509.6 861 42.2
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.6e-140 504.6 498 58.2
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 3.6e-140 503.4 917 40.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.7e-140 503.1 915 40.7
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-139 500.4 710 45.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.2e-137 494.2 892 40.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.3e-137 492.3 950 39.4
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 8.3e-137 492.3 928 42.0
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.0e-131 475.3 927 39.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 8.8e-131 472.2 901 39.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.6e-130 470.7 901 39.7
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 4.4e-130 469.9 937 38.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 4.4e-130 469.9 937 38.1
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 5.7e-130 469.5 900 39.7
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-129 468.0 900 39.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.2e-129 467.6 894 41.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.3e-129 466.1 893 40.2
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-128 465.3 937 38.4
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 5.4e-128 463.0 943 38.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.7e-127 460.7 937 38.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.5e-125 454.1 905 38.5
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.3e-125 453.8 826 37.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.5e-125 452.2 904 37.5
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.8e-124 450.7 573 49.0
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.7e-124 449.9 695 43.0
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.7e-113 413.7 1008 36.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.3e-113 412.5 912 36.6
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.2e-112 410.6 885 36.0
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.0e-110 403.3 443 54.9
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-108 398.3 471 54.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.0e-106 391.3 812 36.6
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 5.6e-101 373.2 571 42.7
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.8e-99 368.2 596 43.3
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.2e-99 366.7 853 35.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-94 351.7 625 39.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.0e-86 325.9 852 34.9
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.0e-86 325.9 918 33.2
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.8e-82 310.1 338 53.6
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 5.1e-78 297.0 271 56.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.0e-74 285.0 348 51.4
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 3.4e-74 284.3 382 47.1
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.7e-70 270.0 710 33.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.7e-70 269.6 765 32.3
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 2.1e-63 248.4 1049 28.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 4.8e-60 237.3 273 52.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.4e-59 235.7 764 29.8
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.2e-57 228.4 420 40.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-56 225.3 218 55.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.6e-55 220.7 277 50.5
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.2e-49 201.8 699 30.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.7e-47 194.9 476 31.1
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 4.8e-36 157.5 288 41.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.3e-36 157.1 111 68.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.8e-33 147.9 353 36.0
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.8e-30 136.7 506 29.2
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.6e-26 125.9 154 49.4
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.2e-24 118.2 97 60.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.8e-22 112.5 277 33.9
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-22 110.9 211 39.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.7e-21 107.5 129 50.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.8e-17 94.7 92 48.9
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.1e-16 93.2 176 38.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 3.6e-15 88.2 130 46.9
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 4.7e-15 87.8 97 52.6
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.3e-14 85.5 121 47.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 5.2e-14 84.3 98 57.1
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-13 82.0 118 44.1
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-11 76.6 154 35.1
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 5.4e-11 74.3 44 70.5
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-08 66.6 74 39.2
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 1.2e-07 63.2 102 41.2
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.8e-07 62.0 103 35.9
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.8e-07 62.0 103 35.9
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.8e-07 62.0 66 56.1
BcaB07g33837 Brassica carinata HOM05D000561 ORTHO05D000514 4.0e-06 58.2 70 44.3


User provided reference genes

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