Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 1.9e-267 925.2 452 100.0
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 3.2e-243 844.7 444 93.2
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 4.7e-186 654.8 487 67.4
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 3.0e-180 635.6 489 64.2
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 2.5e-179 632.5 475 66.1
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 4.7e-178 628.2 486 65.8
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 2.6e-176 622.5 483 64.4
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 6.4e-175 617.8 468 65.4
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 1.9e-174 616.3 477 64.8
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 2.4e-174 615.9 493 64.3
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 4.1e-174 615.1 486 63.6
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 4.1e-174 615.1 456 67.3
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 7.1e-174 614.4 465 65.4
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 9.2e-174 614.0 475 63.6
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 1.2e-173 613.6 468 65.8
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 2.1e-173 612.8 475 62.9
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.1e-173 612.8 474 64.6
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 4.6e-173 611.7 474 64.3
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.0e-172 609.0 462 65.2
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 3.9e-172 608.6 467 64.9
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 5.1e-172 608.2 459 65.6
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 6.6e-172 607.8 479 63.0
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 6.6e-172 607.8 476 63.7
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 1.5e-171 606.7 453 66.0
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 1.5e-171 606.7 453 66.0
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 1.9e-171 606.3 474 64.1
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 9.6e-171 604.0 469 64.8
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 1.6e-170 603.2 468 63.9
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.1e-170 602.8 479 61.8
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 4.7e-170 601.7 451 65.4
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 6.2e-170 601.3 465 63.2
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 8.1e-170 600.9 471 64.1
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 2.4e-169 599.4 462 64.3
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 2.4e-169 599.4 479 61.8
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 4.0e-169 598.6 488 60.2
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 6.9e-169 597.8 482 61.6
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 3.4e-168 595.5 474 62.0
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 7.6e-168 594.3 472 60.0
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 7.6e-168 594.3 559 56.0
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 9.9e-168 594.0 455 65.3
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 9.9e-168 594.0 485 59.2
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 2.2e-167 592.8 478 61.3
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.1e-166 590.5 468 63.0
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 1.9e-166 589.7 476 61.1
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 9.3e-166 587.4 478 60.0
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 9.3e-166 587.4 432 66.7
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 2.1e-165 586.3 450 64.2
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 2.7e-165 585.9 488 61.9
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 3.5e-165 585.5 478 61.1
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.6e-165 585.1 461 64.0
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 4.6e-165 585.1 470 62.1
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 6.0e-165 584.7 491 60.9
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 2.3e-164 582.8 423 67.4
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 2.3e-164 582.8 423 67.4
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.6e-164 581.3 488 58.6
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 8.7e-164 580.9 507 59.2
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 8.7e-164 580.9 493 59.4
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 1.1e-163 580.5 485 61.2
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 1.5e-163 580.1 481 60.5
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 5.6e-163 578.2 479 59.5
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 7.3e-163 577.8 468 61.1
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 2.1e-162 576.2 459 63.4
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 4.8e-162 575.1 477 61.0
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 1.1e-161 573.9 460 63.0
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 5.3e-161 571.6 455 62.9
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 4.9e-159 565.1 487 58.9
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 6.4e-159 564.7 451 62.5
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 6.4e-159 564.7 457 61.5
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 7.1e-158 561.2 514 57.4
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 9.3e-158 560.8 491 58.7
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 1.1e-155 553.9 432 62.7
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.3e-154 550.4 463 61.6
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 3.7e-154 548.9 417 65.2
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 4.0e-153 545.4 403 66.5
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 4.0e-153 545.4 456 59.9
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 1.3e-151 540.4 463 58.5
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.4e-150 536.2 470 58.3
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 3.3e-147 525.8 450 59.1
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.3e-146 523.9 450 57.1
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 3.2e-142 509.2 454 56.2
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 4.2e-142 508.8 470 56.2
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.3e-140 503.8 372 68.8
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.0e-135 487.6 430 55.1
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 6.1e-133 478.4 414 58.9
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 1.9e-131 473.4 453 52.5
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 5.5e-126 455.3 486 47.3
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.0e-119 434.5 482 47.3
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.0e-119 434.5 416 55.8
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 1.1e-115 421.0 359 59.9
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.7e-114 417.2 312 67.6
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 6.3e-114 415.2 280 72.5
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 3.1e-113 412.9 401 53.6
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 3.5e-112 409.5 475 45.3
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 8.5e-111 404.8 427 50.8
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 1.2e-109 401.0 291 68.7
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 2.7e-109 399.8 464 46.1
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 3.6e-109 399.4 357 58.5
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 3.2e-102 376.3 326 58.9
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 2.5e-94 350.1 315 56.5
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 7.2e-94 348.6 371 49.9
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.2e-91 341.3 455 44.0
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 5.7e-91 339.0 442 44.6
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 1.4e-89 334.3 335 52.2
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 5.6e-86 322.4 195 74.9
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 4.3e-78 296.2 271 53.9
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 7.0e-73 278.9 457 38.1
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 4.6e-72 276.2 278 54.0
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.0e-71 275.0 284 54.2
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.0e-71 275.0 284 54.2
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 5.6e-70 269.2 464 34.7
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 7.8e-64 248.8 556 31.5
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.3e-62 243.0 156 74.4
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 9.5e-62 241.9 310 45.5
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 5.2e-60 236.1 254 49.6
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 1.0e-55 221.9 142 75.4
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.9e-50 203.8 130 73.1
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 1.1e-44 185.3 130 66.2
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 7.1e-41 172.6 151 55.6
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 1.9e-38 164.5 137 65.7
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.8e-37 160.6 176 44.3
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 6.2e-37 159.5 96 74.0
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.0e-34 152.1 93 75.3
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.2e-33 147.1 154 50.6
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 1.0e-31 142.1 92 70.7
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 1.1e-28 132.1 91 70.3
AL5G18570 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 2.0e-27 127.9 155 43.9
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 5.5e-25 119.8 100 54.0
arahy.Tifrunner.gnm1.ann1.LNA654 Arachis hypogaea HOM05D001891 ORTHO05D005832 6.1e-24 116.3 74 67.6
arahy.Tifrunner.gnm1.ann1.I8ZYWJ Arachis hypogaea HOM05D001891 ORTHO05D005832 1.5e-22 111.7 69 71.0
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 1.4e-20 105.1 114 52.6
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 5.9e-19 99.8 432 24.8
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.7e-18 98.2 61 75.4
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 3.2e-17 94.0 156 37.8
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 7.9e-16 89.4 105 45.7
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 2.3e-15 87.8 106 39.6
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.1e-12 79.0 47 78.7
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.4e-12 77.8 48 70.8
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 6.9e-12 76.3 119 39.5
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 9.1e-12 75.9 62 59.7
arahy.Tifrunner.gnm1.ann1.TRUR1F Arachis hypogaea HOM05D001891 ORTHO05D005832 1.2e-11 75.5 45 71.1
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 2.9e-10 70.9 53 60.4
AUR62040523 Chenopodium quinoa HOM05D001891 ORTHO05D005832 2.9e-10 70.9 46 67.4
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 1.6e-08 65.1 83 47.0
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.1e-08 64.7 39 76.9
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 2.1e-08 64.7 110 41.8
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 2.1e-08 64.7 83 47.0
MBI01_g08957_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.7e-08 64.3 48 60.4
SEGI_34640 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 3.6e-08 63.9 89 41.6
PRCOL_00002991 Prasinoderma coloniale HOM05D007640 ORTHO05D009514 3.0e-07 60.8 84 40.5
Cre02.g116850 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D009514 6.7e-07 59.7 91 44.0
BcaB05g21660 Brassica carinata HOM05D007640 ORTHO05D009514 8.8e-07 59.3 72 43.1
BraA02t04885Z Brassica rapa HOM05D007640 ORTHO05D009514 8.8e-07 59.3 72 43.1
C02p02770 Brassica napus HOM05D007640 ORTHO05D009514 1.1e-06 58.9 72 43.1
BolC2t06242H Brassica oleracea HOM05D007640 ORTHO05D009514 1.1e-06 58.9 72 43.1
BolC1t04191H Brassica oleracea HOM05D001891 ORTHO05D005832 2.0e-06 58.2 38 63.2
Sp6g36240 Schrenkiella parvula HOM05D007640 ORTHO05D009514 2.0e-06 58.2 72 43.1
SMO361G0244 Selaginella moellendorffii HOM05D007640 ORTHO05D009514 2.0e-06 58.2 73 42.5
Ciclev10013489m.g Citrus clementina HOM05D000525 ORTHO05D007127 2.6e-06 57.8 72 41.7
MCO05G707 Micromonas commoda HOM05D001891 ORTHO05D024999 2.6e-06 57.8 78 38.5
MCO16G494 Micromonas commoda HOM05D001891 ORTHO05D009514 2.6e-06 57.8 73 41.1
Zm00001eb048280 Zea mays HOM05D007640 ORTHO05D009514 3.3e-06 57.4 99 36.4
CARHR206580 Cardamine hirsuta HOM05D007640 ORTHO05D009514 4.4e-06 57.0 72 41.7
COL.COLO4_16026 Corchorus olitorius HOM05D007640 ORTHO05D009514 4.4e-06 57.0 72 40.3
Thhalv10012901m.g Eutrema salsugineum HOM05D000525 ORTHO05D009514 4.4e-06 57.0 72 41.7
MCO15G351 Micromonas commoda HOM05D001891 ORTHO05D005832 5.7e-06 56.6 76 43.4
SalBow1G5859 Salvia bowleyana HOM05D007640 ORTHO05D009514 7.4e-06 56.2 72 41.7
Eucgr.A02498 Eucalyptus grandis HOM05D007640 ORTHO05D009514 9.7e-06 55.8 72 41.7
PRCOL_00002940 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 9.7e-06 55.8 95 40.0
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 9.7e-06 55.8 72 45.8


User provided reference genes

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