Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0019800 Salix brachista HOM05D000070 ORTHO05D050751 1.9e-34 148.7 77 100.0
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 7.9e-33 143.3 73 100.0
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 7.9e-33 143.3 73 100.0
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.6e-30 135.6 73 94.5
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 1.6e-30 135.6 73 94.5
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 5.5e-26 120.6 75 85.3
Thecc.04G186200 Theobroma cacao HOM05D000070 ORTHO05D005931 2.3e-24 115.2 75 80.0
Gohir.D05G327400 Gossypium hirsutum HOM05D000070 ORTHO05D005931 4.3e-23 110.9 72 79.2
Gorai.009G351300 Gossypium raimondii HOM05D000070 ORTHO05D005931 4.3e-23 110.9 72 79.2
Duzib151G0220 Durio zibethinus HOM05D000070 ORTHO05D005931 5.7e-23 110.5 75 77.3
Actinidia34607 Actinidia chinensis HOM05D000070 ORTHO05D005931 7.4e-23 110.2 75 74.7
Dinv36378 Davidia involucrata HOM05D000070 ORTHO05D005931 7.4e-23 110.2 75 73.3
Gohir.A05G327300 Gossypium hirsutum HOM05D000070 ORTHO05D005931 3.7e-22 107.8 72 76.4
CSS0028544 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D005931 1.4e-21 105.9 71 74.6
Actinidia35972 Actinidia chinensis HOM05D000070 ORTHO05D005931 3.1e-21 104.8 70 75.7
GSVIVG01010750001 Vitis vinifera HOM05D000070 ORTHO05D005931 5.3e-21 104.0 75 70.7
Gohir.D02G016900 Gossypium hirsutum HOM05D000070 ORTHO05D005931 2.0e-20 102.1 75 70.7
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 3.4e-20 101.3 75 69.3
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 3.4e-20 101.3 77 71.4
Lj6C54T5 Lonicera japonica HOM05D000070 ORTHO05D005931 4.5e-20 100.9 75 68.0
CAN.G475.45 Capsicum annuum HOM05D000070 ORTHO05D005931 1.0e-19 99.8 75 69.3
Gorai.005G020700 Gossypium raimondii HOM05D000070 ORTHO05D005931 1.3e-19 99.4 75 69.3
Eucgr.A00078 Eucalyptus grandis HOM05D000070 ORTHO05D005931 1.7e-19 99.0 77 66.2
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 3.8e-19 97.8 75 70.7
Cc10_g15760 Coffea canephora HOM05D000070 ORTHO05D005931 6.5e-19 97.1 78 65.4
Nitab4.5_0000131g0440 Nicotiana tabacum HOM05D000070 ORTHO05D005931 1.1e-18 96.3 70 71.4
Nitab4.5_0003300g0060 Nicotiana tabacum HOM05D000070 ORTHO05D005931 1.9e-18 95.5 70 71.4
Aa31LG1G8340 Aethionema arabicum HOM05D000070 ORTHO05D005931 2.5e-18 95.1 74 66.2
AL1G15870 Arabidopsis lyrata HOM05D000070 ORTHO05D005931 5.5e-18 94.0 74 64.9
Carub.0001s0528 Capsella rubella HOM05D000070 ORTHO05D005931 5.5e-18 94.0 74 64.9
Rhsim09G0028300 Rhododendron simsii HOM05D000070 ORTHO05D005931 1.6e-17 92.4 75 64.0
TAR362G0755 Trochodendron aralioides HOM05D000070 ORTHO05D005931 1.6e-17 92.4 76 67.1
vmacro00627 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 1.6e-17 92.4 62 71.0
Solyc04g076180.4 Solanum lycopersicum HOM05D000070 ORTHO05D005931 2.7e-17 91.7 75 64.0
Sopen04g030020 Solanum pennellii HOM05D000070 ORTHO05D005931 2.7e-17 91.7 75 64.0
AT1G05910 Arabidopsis thaliana HOM05D000070 ORTHO05D005931 4.6e-17 90.9 75 66.7
Migut.C01257 Erythranthe guttata HOM05D000070 ORTHO05D005931 4.6e-17 90.9 72 62.5
Thhalv10006586m.g Eutrema salsugineum HOM05D000070 ORTHO05D005931 7.9e-17 90.1 75 66.7
Sp1g04750 Schrenkiella parvula HOM05D000070 ORTHO05D005931 7.9e-17 90.1 74 62.2
CANSAT54G0506 Cannabis sativa HOM05D000070 ORTHO05D005931 3.0e-16 88.2 71 69.0
THA.LOC104826206 Tarenaya hassleriana HOM05D000070 ORTHO05D005931 3.9e-16 87.8 75 62.7
CARHR005470 Cardamine hirsuta HOM05D000070 ORTHO05D005931 5.1e-16 87.4 73 64.4
Nn1g09696 Nelumbo nucifera HOM05D000070 ORTHO05D005931 1.9e-15 85.5 75 64.0
Peaxi162Scf00281g00017 Petunia axillaris HOM05D000070 ORTHO05D005931 1.9e-15 85.5 67 67.2
Atru.chr3.1506 Acer truncatum HOM05D000070 ORTHO05D005931 2.5e-15 85.1 75 62.7
PGR083G1687 Punica granatum HOM05D000070 ORTHO05D005931 2.5e-15 85.1 77 58.4
COL.COLO4_20908 Corchorus olitorius HOM05D000070 ORTHO05D005931 7.4e-15 83.6 75 58.7
SGA_v2.0_scaffold118G32488 Striga asiatica HOM05D000070 ORTHO05D005931 7.4e-15 83.6 74 58.1
C05p04270 Brassica napus HOM05D000070 ORTHO05D005931 2.2e-14 82.0 74 60.8
BolC5t29202H Brassica oleracea HOM05D000070 ORTHO05D005931 2.2e-14 82.0 74 60.8
MSTRG.1524 Avicennia marina HOM05D000070 ORTHO05D005931 2.8e-14 81.6 70 64.3
Ca_20782_v3 Cicer arietinum L. HOM05D000070 ORTHO05D005931 3.7e-14 81.3 76 61.8
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 8.2e-14 80.1 75 60.0
MBI11_g13788_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D005931 1.8e-13 79.0 62 72.6
VMungo1127G1655 Vigna mungo HOM05D000070 ORTHO05D005931 1.8e-13 79.0 75 58.7
BcaC07g42100 Brassica carinata HOM05D000070 ORTHO05D005931 2.4e-13 78.6 75 58.7
C08p51530 Brassica napus HOM05D000070 ORTHO05D005931 2.4e-13 78.6 75 58.7
BolC8t52681H Brassica oleracea HOM05D000070 ORTHO05D005931 2.4e-13 78.6 75 58.7
A09p67240 Brassica napus HOM05D000070 ORTHO05D005931 5.3e-13 77.4 75 58.7
A10p04610 Brassica napus HOM05D000070 ORTHO05D005931 6.9e-13 77.0 74 58.1
BraA10t42726Z Brassica rapa HOM05D000070 ORTHO05D005931 6.9e-13 77.0 74 58.1
CiPaw.01G100800 Carya illinoinensis HOM05D000070 ORTHO05D005931 6.9e-13 77.0 75 64.0
Haze_01497 Corylus avellana HOM05D000067 ORTHO05D005931 1.5e-12 75.9 63 68.3
Psat7g213760 Pisum sativum HOM05D000070 ORTHO05D005931 2.0e-12 75.5 78 57.7
BraA09t42057Z Brassica rapa HOM05D000070 ORTHO05D005931 2.6e-12 75.1 75 57.3
Lalb_Chr01g0003191 Lupinus albus HOM05D000070 ORTHO05D005931 2.6e-12 75.1 75 57.3
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 3.4e-12 74.7 75 57.3
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 3.4e-12 74.7 75 56.0
Cfa015158 Carpinus fangiana HOM05D000070 ORTHO05D005931 4.5e-12 74.3 61 68.9
TPR.G22071 Trifolium pratense HOM05D000070 ORTHO05D050751 4.5e-12 74.3 76 57.9
Medtr4g067100 Medicago truncatula HOM05D000070 ORTHO05D005931 7.7e-12 73.6 76 57.9
Lj3g0013218 Lotus japonicus HOM05D000070 ORTHO05D005931 2.2e-11 72.0 73 56.2
arahy.Tifrunner.gnm1.ann1.4K4GN8 Arachis hypogaea HOM05D000070 ORTHO05D005931 3.8e-11 71.2 75 54.7
arahy.Tifrunner.gnm1.ann1.B2FMMM Arachis hypogaea HOM05D000070 ORTHO05D005931 3.8e-11 71.2 75 54.7
DCAR_016935 Daucus carota HOM05D000070 ORTHO05D005931 4.2e-10 67.8 75 54.7
QL10p048553 Quercus lobata HOM05D000070 ORTHO05D005931 4.2e-10 67.8 54 70.4
Sc25g0003000 Simmondsia chinensis HOM05D000070 ORTHO05D005931 1.2e-09 66.2 64 59.4
unitig_0.g2134 Utricularia gibba HOM05D000070 ORTHO05D005931 4.6e-09 64.3 77 45.5
Os09g0515100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D005931 5.1e-08 60.8 70 54.3
Zm00001eb318390 Zea mays HOM05D000070 ORTHO05D005931 1.5e-07 59.3 56 58.9
ClCG08G004540 Citrullus lanatus HOM05D000070 ORTHO05D005931 4.4e-07 57.8 74 47.3
Prupe.1G191800 Prunus persica HOM05D000070 ORTHO05D005931 4.4e-07 57.8 70 50.0
Sed0022342 Sechium edule HOM05D000070 ORTHO05D005931 5.7e-07 57.4 63 52.4
Cpa.g.sc9.267 Carica papaya HOM05D000070 ORTHO05D005931 7.4e-07 57.0 47 63.8
ATR0743G258 Amborella trichopoda HOM05D000070 ORTHO05D005931 1.7e-06 55.8 53 58.5
MELO3C011649.2 Cucumis melo HOM05D000070 ORTHO05D005931 2.2e-06 55.5 74 44.6
CsaV3_6G003880 Cucumis sativus L. HOM05D000070 ORTHO05D005931 3.7e-06 54.7 74 44.6


User provided reference genes

Program Settings