Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 5.1e-176 620.9 306 100.0
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.2e-102 376.3 202 93.1
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.7e-70 270.4 196 67.3
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 4.2e-69 265.8 195 67.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 7.1e-69 265.0 197 66.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.1e-68 263.5 196 64.3
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 4.6e-68 262.3 196 64.8
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.3e-67 260.8 197 65.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.3e-67 260.0 190 67.4
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.0e-67 259.6 196 64.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.0e-67 259.6 196 64.3
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 6.7e-67 258.5 189 67.2
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 8.7e-67 258.1 195 64.1
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.1e-66 257.7 196 62.8
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.5e-66 257.3 196 65.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.3e-66 256.1 196 64.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.3e-66 255.8 190 66.8
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.3e-65 254.2 207 59.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.8e-65 253.1 196 63.3
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.8e-65 252.3 196 64.8
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.8e-65 252.3 201 62.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 6.2e-65 251.9 200 61.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.2e-65 251.5 190 65.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.1e-64 251.1 210 61.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-64 251.1 196 61.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.4e-64 250.8 195 64.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.8e-64 250.4 196 62.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.3e-64 248.8 191 62.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 9.0e-64 248.1 188 64.9
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 9.0e-64 248.1 196 64.3
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-63 247.7 194 64.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.5e-63 247.3 196 60.7
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.6e-63 246.5 201 60.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.4e-63 246.1 198 62.1
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 7.6e-63 245.0 198 59.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.0e-62 244.6 197 62.9
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.0e-62 244.6 228 54.8
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.3e-62 244.2 196 62.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.7e-62 243.8 243 54.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-62 243.8 191 62.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.8e-62 242.7 194 61.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 3.8e-62 242.7 196 62.2
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.9e-62 242.3 197 62.4
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 4.9e-62 242.3 195 60.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 6.5e-62 241.9 196 60.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.1e-61 241.1 196 63.3
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.4e-61 240.7 194 59.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.9e-61 240.4 196 60.2
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.5e-61 240.0 196 60.2
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 3.2e-61 239.6 198 60.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.2e-61 239.6 191 61.3
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 4.2e-61 239.2 194 61.3
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 7.1e-61 238.4 196 62.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.2e-60 237.7 197 62.4
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.1e-60 236.9 197 58.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.1e-60 236.9 196 60.7
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.7e-60 236.5 196 59.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 2.7e-60 236.5 196 60.2
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.6e-60 235.7 196 58.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.6e-60 235.7 190 59.5
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.6e-60 235.7 194 60.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.6e-60 235.7 198 59.6
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.6e-60 235.7 199 58.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.1e-60 235.3 193 57.0
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.1e-60 235.3 199 55.8
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 7.9e-60 235.0 192 60.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.9e-60 235.0 193 60.6
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.0e-59 234.6 200 58.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-59 234.2 196 56.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 5.1e-59 232.3 208 53.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.7e-59 231.9 191 60.7
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.9e-58 230.3 195 60.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.7e-58 228.0 196 57.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.2e-57 226.9 193 60.6
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.8e-57 226.5 189 61.4
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.8e-57 225.7 196 55.6
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 6.3e-57 225.3 196 58.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.3e-57 225.3 193 60.1
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.8e-56 223.8 192 57.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-56 223.8 202 55.4
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.4e-56 223.4 196 57.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.1e-56 223.0 192 55.7
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 9.0e-56 221.5 196 54.1
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.5e-55 220.7 194 55.7
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.5e-55 220.7 194 53.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.6e-55 219.9 195 54.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 3.4e-55 219.5 195 55.9
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.5e-55 219.2 202 54.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 4.5e-55 219.2 196 57.7
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 7.7e-55 218.4 199 51.8
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.0e-54 218.0 190 55.3
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.7e-54 217.2 190 55.3
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.2e-54 216.9 192 57.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.2e-54 216.9 185 55.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.9e-54 216.5 191 56.5
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.8e-54 216.1 212 53.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.8e-54 216.1 192 56.8
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 6.5e-54 215.3 181 60.2
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 6.5e-54 215.3 192 57.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.5e-54 214.9 196 55.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.5e-54 214.9 189 57.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.9e-53 213.8 194 56.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.9e-53 213.8 194 56.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.5e-53 213.4 197 52.8
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 5.5e-53 212.2 206 51.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 7.2e-53 211.8 192 53.6
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 7.2e-53 211.8 206 51.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.1e-52 210.3 193 54.4
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.6e-52 209.5 196 56.1
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.6e-52 209.1 192 53.1
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.4e-51 207.6 205 52.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.8e-51 207.2 174 60.3
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.3e-51 206.8 178 57.9
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.9e-51 206.1 196 51.5
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 5.1e-51 205.7 192 51.6
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.7e-51 205.3 199 53.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.0e-50 203.8 145 68.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.5e-50 203.4 198 52.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-50 203.4 192 52.6
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-50 203.0 201 50.7
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.3e-50 202.6 192 52.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 5.7e-50 202.2 192 51.6
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 7.4e-50 201.8 192 53.1
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.3e-49 201.1 189 55.0
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.3e-49 201.1 194 51.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.2e-49 200.3 204 52.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-49 199.9 217 47.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.8e-49 199.1 166 58.4
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.4e-48 196.8 166 59.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 3.1e-48 196.4 196 52.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.1e-48 196.4 188 54.3
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 4.1e-48 196.1 175 55.4
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 9.1e-48 194.9 142 66.2
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 9.1e-48 194.9 193 51.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.5e-47 194.1 163 57.1
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-47 194.1 192 52.1
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-47 193.4 192 51.0
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.2e-46 190.3 190 51.1
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.8e-46 189.5 197 50.3
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.4e-45 187.6 172 57.6
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 3.2e-45 186.4 196 46.9
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.2e-45 186.4 199 47.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.5e-45 185.7 188 48.9
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.0e-43 181.4 202 46.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.9e-43 179.5 165 53.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.1e-40 171.4 197 44.7
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.1e-40 171.4 199 45.7
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.1e-40 171.4 199 45.7
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-40 171.0 199 45.2
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.4e-40 171.0 165 55.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.4e-40 170.2 150 52.7
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.0e-40 168.7 207 44.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.0e-39 167.2 199 46.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.9e-39 165.6 128 61.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.7e-39 165.2 183 51.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.9e-38 163.3 206 45.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-36 157.9 183 46.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.7e-36 156.8 150 50.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.3e-34 149.8 126 54.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.7e-34 148.3 130 54.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-31 141.4 162 48.8
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.5e-31 139.8 197 39.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.4e-26 122.9 113 53.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.4e-24 117.9 112 54.5
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.8e-22 109.8 192 36.5
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.2e-21 105.5 196 34.2
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.6e-20 104.4 191 40.3
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.0e-16 89.0 105 45.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 9.1e-16 88.6 196 32.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.0e-15 87.4 166 34.3
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.2e-13 79.7 76 50.0
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.1e-12 77.4 219 28.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 4.7e-12 76.3 198 27.3
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 8.0e-12 75.5 193 29.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.8e-11 74.3 84 48.8
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.4e-10 69.7 162 32.7
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-09 68.2 95 41.1
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 8.3e-09 65.5 83 43.4
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.0e-07 60.8 71 46.5


User provided reference genes

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