Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.1e-85 318.9 156 100.0
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.2e-75 286.6 152 92.1
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 9.6e-62 240.4 152 80.3
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.3e-61 240.0 133 88.0
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.8e-60 236.1 145 82.1
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.8e-60 236.1 134 85.8
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.8e-60 236.1 151 76.2
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.8e-60 236.1 145 81.4
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.8e-60 236.1 145 81.4
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 3.1e-60 235.3 153 78.4
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 3.1e-60 235.3 128 85.2
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 3.1e-60 235.3 148 78.4
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 4.0e-60 235.0 128 84.4
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.0e-60 235.0 123 89.4
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.3e-60 234.6 128 85.9
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 6.9e-60 234.2 153 77.8
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 9.0e-60 233.8 120 90.0
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 9.0e-60 233.8 120 90.0
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.2e-59 233.4 128 83.6
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-59 233.0 150 77.3
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.0e-59 232.6 139 82.0
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 2.0e-59 232.6 153 78.4
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 2.0e-59 232.6 121 87.6
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.6e-59 232.3 144 79.2
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.6e-59 232.3 136 83.8
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 3.4e-59 231.9 116 89.7
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.4e-59 231.9 120 90.0
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 4.5e-59 231.5 128 85.2
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 5.8e-59 231.1 154 78.6
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 7.6e-59 230.7 131 83.2
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.6e-59 230.7 144 78.5
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 7.6e-59 230.7 116 89.7
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 7.6e-59 230.7 121 87.6
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 9.9e-59 230.3 128 83.6
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 9.9e-59 230.3 140 78.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 9.9e-59 230.3 156 75.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.3e-58 229.9 135 81.5
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.3e-58 229.9 135 81.5
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.3e-58 229.9 150 76.7
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.3e-58 229.9 144 77.8
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.7e-58 229.6 135 80.7
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.7e-58 229.6 120 87.5
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.7e-58 229.6 120 87.5
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.7e-58 229.6 136 80.1
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.7e-58 229.6 128 83.6
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.2e-58 229.2 150 74.0
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.2e-58 229.2 141 79.4
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.2e-58 229.2 150 74.7
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.2e-58 229.2 154 74.0
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.9e-58 228.8 142 76.1
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.9e-58 228.8 139 78.4
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.9e-58 228.8 113 89.4
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.9e-58 228.8 150 75.3
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.8e-58 228.4 147 76.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 3.8e-58 228.4 150 73.3
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 3.8e-58 228.4 150 73.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 4.9e-58 228.0 153 73.9
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.1e-57 226.9 140 78.6
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.4e-57 226.5 144 77.1
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.9e-57 226.1 120 86.7
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.9e-57 226.1 116 87.9
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 2.4e-57 225.7 139 77.7
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 5.4e-57 224.6 116 86.2
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 7.1e-57 224.2 130 79.2
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 7.1e-57 224.2 129 82.2
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 9.3e-57 223.8 138 78.3
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 9.3e-57 223.8 138 78.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 9.3e-57 223.8 138 78.3
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 9.3e-57 223.8 144 77.1
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 9.3e-57 223.8 122 84.4
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 9.3e-57 223.8 122 84.4
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 9.3e-57 223.8 157 71.3
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.2e-56 223.4 152 73.0
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.2e-56 223.4 157 72.0
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 2.7e-56 222.2 151 73.5
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.7e-56 222.2 150 74.0
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 4.6e-56 221.5 154 72.7
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 6.0e-56 221.1 148 75.0
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.8e-55 219.5 116 85.3
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.8e-55 219.5 146 74.0
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.3e-55 219.2 122 84.4
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 3.9e-55 218.4 154 73.4
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 5.1e-55 218.0 158 69.0
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 8.7e-55 217.2 120 81.7
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.5e-54 216.5 114 84.2
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-54 216.5 119 82.4
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-54 216.5 119 82.4
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.9e-54 216.1 119 82.4
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.5e-54 215.7 132 79.5
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.5e-54 215.7 153 69.9
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 7.4e-54 214.2 156 68.6
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.3e-53 213.4 159 67.3
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.1e-53 212.6 129 79.1
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 2.8e-53 212.2 112 83.0
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 3.7e-53 211.8 129 79.8
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 3.7e-53 211.8 128 75.0
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.1e-52 210.3 138 73.9
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.8e-52 209.5 153 66.7
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 3.1e-52 208.8 143 74.8
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 5.3e-52 208.0 144 67.4
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.9e-52 207.6 151 67.5
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.9e-52 207.6 151 67.5
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 9.0e-52 207.2 145 69.0
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.5e-51 206.5 131 77.9
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 2.0e-51 206.1 135 74.1
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 2.6e-51 205.7 130 76.9
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 6.4e-50 201.1 105 85.7
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 8.4e-50 200.7 146 66.4
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.4e-49 199.9 149 69.1
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 9.3e-49 197.2 104 82.7
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 9.3e-49 197.2 126 69.8
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.1e-48 196.1 171 61.4
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.7e-48 195.7 104 81.7
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.5e-48 195.3 154 66.2
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 3.0e-47 192.2 140 63.6
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 4.8e-45 184.9 129 63.6
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.4e-44 182.6 153 65.4
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 2.4e-44 182.6 161 65.2
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.8e-43 177.9 157 63.7
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 5.8e-43 177.9 91 82.4
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.9e-41 172.9 156 61.5
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 7.1e-41 171.0 101 82.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.6e-40 169.9 89 86.5
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 2.7e-40 169.1 100 83.0
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.3e-39 166.8 98 80.6
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.3e-37 160.2 130 66.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.1e-36 157.1 78 84.6
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.0e-35 152.9 111 70.3
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.4e-33 146.7 77 92.2
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.8e-28 129.8 104 60.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 5.9e-27 124.8 61 85.2
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.1e-25 120.6 64 79.7
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.9e-23 112.1 76 76.3
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 2.4e-20 102.8 62 69.4
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 5.9e-19 98.2 52 84.6
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.4e-17 93.6 43 86.0
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.9e-15 85.5 52 71.2
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 8.2e-13 77.8 58 72.4
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.6e-11 73.6 46 80.4
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 3.5e-11 72.4 83 59.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.9e-11 71.6 49 69.4
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.7e-10 70.1 42 73.8
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.2e-10 69.7 40 72.5
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.3e-07 59.7 30 76.7


User provided reference genes

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