Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.3e-254 881.7 436 100.0
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.6e-218 762.7 438 87.7
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 2.1e-143 513.1 442 62.9
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.1e-134 482.6 425 61.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 2.2e-132 476.5 437 58.1
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 5.5e-131 471.9 438 59.6
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 7.9e-130 468.0 419 61.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 3.9e-129 465.7 424 60.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 8.7e-129 464.5 423 58.9
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.9e-128 463.4 423 58.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.7e-128 461.8 445 58.9
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-127 458.4 423 58.4
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.4e-126 456.4 429 58.7
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.1e-126 456.1 418 58.9
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 6.9e-126 454.9 433 56.8
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-125 454.1 423 58.2
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.5e-125 453.8 440 56.4
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.0e-124 451.1 424 58.7
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 3.2e-123 446.0 461 53.8
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 7.2e-123 444.9 483 52.0
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.0e-120 436.8 420 57.1
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.4e-118 429.9 432 55.1
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.4e-118 429.9 441 54.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 6.9e-118 428.3 409 57.0
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.4e-117 426.0 426 55.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.3e-116 424.1 417 56.8
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.8e-116 422.5 418 55.7
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 6.5e-116 421.8 403 58.1
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.2e-115 419.1 426 54.2
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.0e-113 412.9 425 54.8
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.9e-113 412.5 425 54.8
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 8.8e-113 411.4 439 52.6
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 8.8e-113 411.4 416 53.6
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 2.0e-112 410.2 469 52.5
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 2.6e-112 409.8 419 54.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.6e-112 409.8 424 53.8
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.3e-112 409.5 438 53.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 4.4e-112 409.1 439 52.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 4.4e-112 409.1 425 54.6
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.8e-111 406.4 417 54.0
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.7e-111 406.0 417 54.9
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 4.8e-111 405.6 452 51.1
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.2e-111 404.8 434 53.5
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.1e-110 404.4 422 54.5
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.1e-110 402.9 424 51.4
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.2e-109 401.0 438 50.9
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 3.5e-109 399.4 437 49.9
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.7e-108 397.1 427 51.8
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 5.5e-107 392.1 430 52.1
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 7.2e-107 391.7 434 50.9
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.6e-106 390.6 526 47.1
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.1e-106 390.2 421 52.5
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 3.6e-106 389.4 430 50.2
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 6.1e-106 388.7 452 50.2
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.5e-104 384.0 442 50.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 7.4e-104 381.7 432 51.2
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 9.7e-104 381.3 416 50.7
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 2.8e-103 379.8 425 50.4
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 3.7e-103 379.4 437 49.0
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.1e-102 376.3 422 49.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 3.1e-102 376.3 425 51.3
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 7.0e-102 375.2 420 51.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.7e-100 370.5 422 50.0
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 5.0e-100 369.0 426 50.2
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 6.5e-100 368.6 292 65.4
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 6.5e-100 368.6 425 49.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.5e-99 366.7 430 48.1
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 2.1e-98 363.6 317 59.0
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 8.0e-98 361.7 423 48.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.4e-97 360.9 440 49.3
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.8e-97 360.5 424 49.5
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 3.0e-97 359.8 425 49.4
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 3.0e-97 359.8 424 49.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 3.0e-97 359.8 424 49.3
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 3.0e-97 359.8 425 49.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.2e-97 359.0 430 47.4
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.2e-97 359.0 302 60.3
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.0e-96 357.1 418 49.3
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.6e-96 356.7 439 46.5
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.3e-95 354.4 427 46.6
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.8e-95 353.2 418 48.1
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 3.7e-95 352.8 418 50.2
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.8e-95 352.4 450 47.3
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-94 351.3 417 50.4
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.4e-94 350.9 441 48.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 3.1e-94 349.7 317 57.1
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.1e-94 349.7 437 49.4
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 7.0e-94 348.6 421 49.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 9.1e-94 348.2 436 47.2
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.0e-93 347.1 447 45.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.0e-93 347.1 421 49.2
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 2.9e-92 343.2 429 47.6
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.5e-91 340.9 431 47.3
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-90 337.8 438 47.3
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.4e-89 334.3 377 49.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 3.0e-89 333.2 410 48.0
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.8e-87 326.6 432 46.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.1e-86 324.7 433 44.3
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.1e-86 324.7 423 45.9
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 9.1e-86 321.6 440 44.5
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.5e-85 319.7 440 42.3
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.0e-84 318.2 435 45.3
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 6.1e-82 308.9 531 39.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.8e-81 307.4 305 55.1
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 3.0e-81 306.6 289 56.7
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 3.4e-80 303.1 289 56.4
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 3.4e-80 303.1 289 56.4
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.3e-79 301.2 290 56.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.7e-79 300.8 290 55.5
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 6.3e-79 298.9 400 43.2
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.6e-77 292.7 307 53.7
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 8.0e-74 282.0 442 41.6
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 3.1e-73 280.0 444 41.2
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.6e-66 257.7 356 46.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.4e-62 244.6 273 51.3
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.5e-59 234.6 354 39.8
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.3e-59 233.4 261 49.0
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 8.1e-58 228.8 364 42.0
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.4e-57 228.0 332 41.3
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.9e-57 225.3 301 42.5
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 5.1e-52 209.5 272 46.0
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 6.2e-50 202.6 271 45.4
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.8e-49 201.1 183 58.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 9.9e-48 195.3 306 37.9
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 9.9e-48 195.3 204 52.5
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 3.8e-47 193.4 298 39.3
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 5.3e-41 172.9 297 36.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 4.4e-40 169.9 296 39.2
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 7.9e-37 159.1 144 60.4
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 5.1e-36 156.4 257 38.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.9e-35 154.5 128 59.4
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-34 151.8 124 62.1
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 7.6e-32 142.5 217 42.9
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.2e-30 136.7 112 64.3
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 4.2e-30 136.7 262 35.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 7.1e-30 136.0 225 41.8
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 1.8e-28 131.3 100 64.0
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-27 128.6 100 67.0
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-26 124.8 102 64.7
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.0e-25 120.2 223 34.5
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.8e-23 113.6 223 34.1
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 4.2e-22 110.2 68 73.5
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 4.2e-22 110.2 81 66.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 7.1e-22 109.4 159 45.3
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.3e-20 105.1 279 29.7
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 3.3e-19 100.5 105 47.6
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 9.6e-19 99.0 74 66.2
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.6e-19 99.0 61 68.9
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-17 95.1 66 63.6
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 9.0e-17 92.4 142 40.1
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.5e-16 91.7 50 80.0
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-12 79.0 63 63.5
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-12 79.0 47 68.1
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 2.3e-12 77.8 91 52.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.9e-12 77.0 109 43.1
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-11 75.5 53 67.9
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.8e-10 70.1 173 33.5
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 8.2e-10 69.3 53 56.6
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.7e-07 61.6 97 38.1
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.8e-07 60.5 136 34.6
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.8e-07 60.5 44 65.9
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 1.1e-06 58.9 72 52.8


User provided reference genes

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