Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 0.0e+00 1552.3 824 100.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 959 71.4
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 959 68.2
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 0.0e+00 1104.0 864 71.9
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 4.4e-291 1004.6 970 59.4
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 4.0e-284 981.5 966 59.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 3.4e-283 978.4 990 57.8
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 4.9e-282 974.5 967 57.8
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 7.1e-281 970.7 961 56.8
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.6e-280 969.5 971 57.3
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 3.5e-280 968.4 965 57.9
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 7.8e-280 967.2 970 57.5
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 1.7e-279 966.1 961 58.3
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.7e-279 966.1 956 58.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.3e-279 965.7 962 58.4
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 3.9e-279 964.9 974 57.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 1.9e-278 962.6 961 58.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 3.3e-278 961.8 956 58.8
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 7.3e-278 960.7 960 58.0
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 1.6e-277 959.5 963 57.9
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 2.1e-277 959.1 970 57.7
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 2.4e-276 955.7 961 57.5
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 3.1e-276 955.3 957 58.0
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 6.9e-276 954.1 962 57.0
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 9.0e-276 953.7 965 57.5
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 1.5e-275 953.0 959 57.4
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 4.5e-275 951.4 961 57.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 7.6e-275 950.7 959 57.4
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 1.7e-274 949.5 958 57.0
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 4.9e-274 948.0 960 56.2
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 6.4e-274 947.6 952 57.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 3.2e-273 945.3 961 57.3
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 5.4e-273 944.5 962 57.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 9.3e-273 943.7 959 56.7
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 2.1e-272 942.6 962 57.0
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 1.0e-271 940.3 962 56.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 2.3e-271 939.1 954 57.0
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 2.3e-271 939.1 957 56.0
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 3.9e-271 938.3 962 58.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 5.1e-271 937.9 965 56.3
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 9.6e-270 933.7 971 55.5
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 1.3e-269 933.3 961 56.4
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 5.3e-268 927.9 961 55.6
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 9.0e-268 927.2 956 56.2
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 7.6e-267 924.1 951 53.9
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 1.3e-266 923.3 956 56.2
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.3e-266 923.3 956 55.6
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 1.9e-265 919.5 954 56.1
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.9e-265 919.5 959 55.9
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 3.2e-265 918.7 951 55.3
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 3.2e-265 918.7 967 55.6
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 4.2e-265 918.3 969 57.7
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 2.1e-264 916.0 964 56.0
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 4.6e-264 914.8 956 55.9
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 3.9e-263 911.8 940 55.7
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 3.9e-263 911.8 962 55.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 5.1e-263 911.4 955 55.2
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 1.1e-262 910.2 954 55.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 1.5e-262 909.8 959 55.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.9e-262 909.4 954 55.8
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 3.3e-262 908.7 958 55.7
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.3e-262 908.3 954 55.1
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 1.3e-261 906.7 981 54.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 2.1e-261 906.0 959 55.4
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 1.8e-260 902.9 955 55.3
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 4.0e-260 901.7 969 54.5
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 6.9e-260 901.0 967 54.6
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 9.0e-260 900.6 969 54.4
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.0e-259 899.4 954 54.8
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 5.8e-259 897.9 942 55.4
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 7.6e-259 897.5 969 54.4
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 1.3e-258 896.7 960 54.7
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 2.9e-258 895.6 973 54.6
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 3.8e-258 895.2 963 55.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.9e-258 894.8 962 54.3
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 8.4e-258 894.0 963 54.2
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 1.4e-257 893.3 960 55.2
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 1.4e-257 893.3 986 55.9
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 4.2e-257 891.7 983 54.5
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 4.2e-257 891.7 950 57.7
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 4.2e-257 891.7 988 53.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 7.1e-257 891.0 958 54.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 1.6e-256 889.8 942 55.0
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 1.6e-256 889.8 963 54.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 6.0e-256 887.9 938 55.1
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 3.0e-255 885.6 956 53.7
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 8.7e-255 884.0 973 53.8
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 2.2e-253 879.4 956 53.6
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.2e-253 879.4 963 54.4
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 2.8e-253 879.0 914 55.7
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 2.0e-251 872.8 961 54.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 1.9e-249 866.3 964 54.0
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 7.2e-249 864.4 964 53.0
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.6e-248 861.7 916 55.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 5.1e-247 858.2 933 53.7
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 8.8e-247 857.4 934 53.6
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 5.7e-246 854.7 898 55.6
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 1.8e-244 849.7 1030 50.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 3.1e-244 849.0 935 51.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 1.3e-242 843.6 916 55.7
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.4e-241 840.1 943 55.1
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.6e-240 836.6 954 52.3
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 3.6e-240 835.5 910 54.6
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 6.1e-240 834.7 984 53.2
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 5.1e-239 831.6 917 53.9
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 9.7e-238 827.4 1048 49.6
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 9.7e-238 827.4 1007 48.6
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.3e-236 821.6 882 55.3
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 2.9e-234 815.8 957 49.9
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 3.6e-232 808.9 961 50.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 3.0e-223 779.2 930 50.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 7.2e-217 758.1 958 47.9
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 9.4e-217 757.7 854 51.2
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 8.6e-210 734.6 936 47.8
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.5e-190 670.6 812 49.4
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.4e-188 664.1 801 49.4
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 3.9e-186 656.0 981 41.9
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.8e-183 647.1 931 42.6
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 6.8e-183 645.2 572 60.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 4.9e-181 639.0 790 50.6
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 4.6e-179 632.5 809 45.9
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 4.3e-177 625.9 781 49.2
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.9e-170 602.8 505 62.8
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 8.1e-168 595.1 334 85.0
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.3e-167 592.4 341 81.5
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.3e-164 581.6 363 76.9
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 8.1e-160 568.5 339 80.5
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.1e-154 549.3 759 45.8
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.3e-153 546.6 341 76.5
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 5.1e-130 469.5 298 77.2
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 2.2e-109 401.0 297 68.7
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.2e-105 388.7 587 46.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.3e-104 385.2 484 49.4
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.2e-104 384.4 413 52.3
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.2e-100 370.5 495 51.3
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.1e-95 355.5 603 42.1
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 8.0e-91 339.3 599 39.7
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 8.9e-82 309.3 876 31.3
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.7e-77 295.0 167 83.8
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.3e-76 290.4 448 45.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 5.6e-76 290.0 754 32.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.3e-76 289.7 213 77.0
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 4.1e-71 273.9 983 28.2
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 5.2e-58 230.3 1035 25.8
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 9.9e-49 199.5 144 79.9
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 3.0e-45 188.0 104 85.6
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.3e-40 172.6 107 79.4
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.1e-39 169.5 107 71.0
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.5e-31 141.7 87 74.7
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 4.6e-30 137.5 151 51.0
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 2.5e-23 115.2 86 68.6
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 5.9e-17 94.0 68 76.5
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-15 89.4 86 53.5
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 3.2e-15 88.2 70 64.3
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 5.5e-15 87.4 61 68.9
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.9e-13 81.3 45 80.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.7e-13 80.5 55 69.1
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 9.7e-12 76.6 64 57.8
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.7e-11 74.7 70 54.3
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.7e-11 74.7 53 75.5
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 2.6e-09 68.6 52 65.4
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.9e-08 65.1 44 59.1


User provided reference genes

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