Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0087100 Salix brachista HOM05D001873 ORTHO05D350139 2.3e-35 151.8 80 100.0
Potri.016G079200 Populus trichocarpa HOM05D001873 ORTHO05D001976 8.5e-22 106.7 63 85.7
Potri.006G212400 Populus trichocarpa HOM05D001873 ORTHO05D001976 3.7e-17 91.3 65 78.5
FvH4_6g18900 Fragaria vesca HOM05D001873 ORTHO05D001976 5.3e-16 87.4 66 74.2
Sabra06G0163500 Salix brachista HOM05D001873 ORTHO05D001976 9.1e-16 86.7 65 73.8
Cfa016619 Carpinus fangiana HOM05D001873 ORTHO05D001976 5.5e-13 77.4 66 66.7
GSVIVG01033857001 Vitis vinifera HOM05D001873 ORTHO05D001976 7.2e-13 77.0 66 68.2
COL.COLO4_29717 Corchorus olitorius HOM05D001873 ORTHO05D001976 9.4e-13 76.6 68 67.6
RcHm_v2.0_Chr3g0473891 Rosa chinensis HOM05D001873 ORTHO05D001976 4.7e-12 74.3 65 66.2
Medtr7g104800 Medicago truncatula HOM05D001873 ORTHO05D001976 1.4e-11 72.8 72 62.5
Oeu002373.1 Olea europaea HOM05D001873 ORTHO05D001976 1.4e-11 72.8 68 63.2
Thecc.05G090400 Theobroma cacao HOM05D001873 ORTHO05D001976 1.4e-11 72.8 68 66.2
QL07p038668 Quercus lobata HOM05D001873 ORTHO05D001976 1.8e-11 72.4 63 66.7
GSVIVG01036119001 Vitis vinifera HOM05D001873 ORTHO05D001976 1.8e-11 72.4 72 59.7
arahy.Tifrunner.gnm1.ann1.AJL8C7 Arachis hypogaea HOM05D001873 ORTHO05D001976 2.3e-11 72.0 70 58.6
arahy.Tifrunner.gnm1.ann1.TJRX0G Arachis hypogaea HOM05D001873 ORTHO05D001976 2.3e-11 72.0 70 58.6
CSS0042702 Camellia sinensis var. sinensis HOM05D001873 ORTHO05D001976 2.3e-11 72.0 67 64.2
Ciclev10011562m.g Citrus clementina HOM05D001873 ORTHO05D001976 3.0e-11 71.6 65 63.1
Solyc09g009890.4 Solanum lycopersicum HOM05D001873 ORTHO05D001976 6.7e-11 70.5 65 64.6
Sopen09g004640 Solanum pennellii HOM05D001873 ORTHO05D001976 6.7e-11 70.5 65 64.6
Haze_19624 Corylus avellana HOM05D001873 ORTHO05D001976 8.8e-11 70.1 65 64.6
MD11G1164700 Malus domestica HOM05D001873 ORTHO05D001976 1.5e-10 69.3 70 58.6
TAR636G0288 Trochodendron aralioides HOM05D001873 ORTHO05D001976 1.5e-10 69.3 64 62.5
Prupe.7G108900 Prunus persica HOM05D001873 ORTHO05D001976 2.0e-10 68.9 65 63.1
Glyma.03G196700 Glycine max HOM05D001873 ORTHO05D001976 4.4e-10 67.8 68 60.3
Sp6g01290 Schrenkiella parvula HOM05D001873 ORTHO05D001976 5.7e-10 67.4 69 56.5
CiPaw.10G010600 Carya illinoinensis HOM05D001873 ORTHO05D001976 7.5e-10 67.0 66 59.1
TPR.G23326 Trifolium pratense HOM05D001873 ORTHO05D001976 7.5e-10 67.0 82 53.7
CSS0019368 Camellia sinensis var. sinensis HOM05D001873 ORTHO05D001976 1.7e-09 65.9 69 58.0
Gohir.A08G005300 Gossypium hirsutum HOM05D001873 ORTHO05D001976 1.7e-09 65.9 68 57.4
Gohir.D08G015700 Gossypium hirsutum HOM05D001873 ORTHO05D001976 1.7e-09 65.9 68 57.4
Gorai.004G010000 Gossypium raimondii HOM05D001873 ORTHO05D001976 1.7e-09 65.9 68 57.4
Lalb_Chr20g0111671 Lupinus albus HOM05D001873 ORTHO05D001976 1.7e-09 65.9 64 62.5
Potri.009G163400 Populus trichocarpa HOM05D001873 ORTHO05D001976 1.7e-09 65.9 73 56.2
MD14G1023900 Malus domestica HOM05D001873 ORTHO05D001976 2.2e-09 65.5 66 60.6
CiPaw.14G099700 Carya illinoinensis HOM05D001873 ORTHO05D001976 2.8e-09 65.1 66 62.1
Thhalv10028602m.g Eutrema salsugineum HOM05D001873 ORTHO05D001976 2.8e-09 65.1 67 56.7
Nitab4.5_0000692g0070 Nicotiana tabacum HOM05D001873 ORTHO05D001976 2.8e-09 65.1 63 57.1
Psat3g032360 Pisum sativum HOM05D001873 ORTHO05D001976 2.8e-09 65.1 78 56.4
Cc01_g09070 Coffea canephora HOM05D001873 ORTHO05D001976 3.7e-09 64.7 71 54.9
Thecc.09G282600 Theobroma cacao HOM05D001873 ORTHO05D001976 3.7e-09 64.7 66 62.1
Duzib150G1484 Durio zibethinus HOM05D001873 ORTHO05D001976 4.8e-09 64.3 67 61.2
Lalb_Chr19g0136441 Lupinus albus HOM05D001873 ORTHO05D001976 4.8e-09 64.3 74 54.1
Glyma.11G182900 Glycine max HOM05D001873 ORTHO05D001976 6.3e-09 63.9 73 56.2
PGR142G1419 Punica granatum HOM05D001873 ORTHO05D001976 6.3e-09 63.9 72 56.9
MD12G1025200 Malus domestica HOM05D001873 ORTHO05D001976 8.2e-09 63.5 66 59.1
Atru.chr3.3237 Acer truncatum HOM05D001873 ORTHO05D001976 1.1e-08 63.2 74 56.8
Dinv21198 Davidia involucrata HOM05D001873 ORTHO05D001976 1.1e-08 63.2 67 56.7
Lj1g0023535 Lotus japonicus HOM05D001873 ORTHO05D001976 1.8e-08 62.4 70 57.1
Prupe.6G130600 Prunus persica HOM05D001873 ORTHO05D001976 1.8e-08 62.4 73 53.4
MBI19_g24051_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.1e-08 61.6 58 60.3
BcaC04g24100 Brassica carinata HOM05D001873 ORTHO05D001976 4.1e-08 61.2 70 52.9
C09p01060 Brassica napus HOM05D001873 ORTHO05D001976 4.1e-08 61.2 70 52.9
BolC9t53039H Brassica oleracea HOM05D001873 ORTHO05D001976 4.1e-08 61.2 70 52.9
Peaxi162Scf00087g00043 Petunia axillaris HOM05D001873 ORTHO05D001976 4.1e-08 61.2 68 51.5
PGR083G0220 Punica granatum HOM05D001873 ORTHO05D001976 4.1e-08 61.2 72 52.8
CARHR249500 Cardamine hirsuta HOM05D001873 ORTHO05D001976 5.3e-08 60.8 68 55.9
Eucgr.B03847 Eucalyptus grandis HOM05D001873 ORTHO05D001976 5.3e-08 60.8 72 54.2
Manes.04G003300 Manihot esculenta HOM05D001873 ORTHO05D001976 5.3e-08 60.8 73 53.4
QL01p012181 Quercus lobata HOM05D001873 ORTHO05D001976 5.3e-08 60.8 76 51.3
Sc02g0000300 Simmondsia chinensis HOM05D001873 ORTHO05D001976 5.3e-08 60.8 69 53.6
Aqoxy2G01132 Aquilegia oxysepala HOM05D001873 ORTHO05D001976 7.0e-08 60.5 32 84.4
Carub.0006s3585 Capsella rubella HOM05D001873 ORTHO05D001976 7.0e-08 60.5 68 55.9
Duzib106G1456 Durio zibethinus HOM05D001873 ORTHO05D001976 7.0e-08 60.5 68 54.4
Duzib170G0866 Durio zibethinus HOM05D001873 ORTHO05D001976 7.0e-08 60.5 68 54.4
Atru.chr5.754 Acer truncatum HOM05D001873 ORTHO05D001976 9.1e-08 60.1 62 59.7
AL6G52630 Arabidopsis lyrata HOM05D001873 ORTHO05D001976 9.1e-08 60.1 69 52.2
Glyma.12G089500 Glycine max HOM05D001873 ORTHO05D001976 9.1e-08 60.1 73 54.8
Atru.chr8.1485 Acer truncatum HOM05D001873 ORTHO05D001976 1.2e-07 59.7 76 50.0
Actinidia31267 Actinidia chinensis HOM05D001873 ORTHO05D001976 1.2e-07 59.7 79 51.9
Ah.15g090830 Amaranthus hybridus HOM05D001873 ORTHO05D001976 1.2e-07 59.7 65 56.9
CDE02G3938 Ceratophyllum demersum HOM05D001873 ORTHO05D001976 1.2e-07 59.7 65 56.9
Potri.004G201900 Populus trichocarpa HOM05D001873 ORTHO05D001976 1.6e-07 59.3 71 53.5
PGSC0003DMG400008877 Solanum tuberosum HOM05D001873 ORTHO05D001976 1.6e-07 59.3 65 56.9
A09p00980 Brassica napus HOM05D001873 ORTHO05D001976 2.0e-07 58.9 70 51.4
BraA09t35768Z Brassica rapa HOM05D001873 ORTHO05D001976 2.0e-07 58.9 70 51.4
A03p31680 Brassica napus HOM05D001873 ORTHO05D001976 2.7e-07 58.5 68 55.9
Cpa.g.sc141.13 Carica papaya HOM05D001873 ORTHO05D001976 2.7e-07 58.5 71 53.5
Ciclev10028342m.g Citrus clementina HOM05D001873 ORTHO05D001976 2.7e-07 58.5 70 54.3
CsaV3_6G038380 Cucumis sativus L. HOM05D001873 ORTHO05D001976 2.7e-07 58.5 84 50.0
Hund19923 Selenicereus undatus HOM05D001873 ORTHO05D001976 2.7e-07 58.5 76 48.7
TWI74G1254 Tripterygium wilfordii HOM05D001873 ORTHO05D001976 2.7e-07 58.5 69 50.7
TWI79G0697 Tripterygium wilfordii HOM05D001873 ORTHO05D001976 2.7e-07 58.5 71 56.3
Cpa.g.sc5.9 Carica papaya HOM05D001873 ORTHO05D001976 3.5e-07 58.2 67 56.7
Manes.09G054400 Manihot esculenta HOM05D001873 ORTHO05D001976 3.5e-07 58.2 66 56.1
TAR633G2108 Trochodendron aralioides HOM05D001873 ORTHO05D001976 3.5e-07 58.2 64 54.7
Cc02_g39900 Coffea canephora HOM05D001873 ORTHO05D001976 4.5e-07 57.8 63 52.4
Gohir.A01G205600 Gossypium hirsutum HOM05D001873 ORTHO05D001976 4.5e-07 57.8 68 54.4
Gohir.A04G062100 Gossypium hirsutum HOM05D001873 ORTHO05D001976 4.5e-07 57.8 69 52.2
Gohir.D01G195100 Gossypium hirsutum HOM05D001873 ORTHO05D001976 4.5e-07 57.8 68 54.4
Gorai.002G239200 Gossypium raimondii HOM05D001873 ORTHO05D001976 4.5e-07 57.8 68 54.4
Manes.05G017400 Manihot esculenta HOM05D001873 ORTHO05D001976 4.5e-07 57.8 64 53.1
Psat7g187840 Pisum sativum HOM05D001873 ORTHO05D001976 4.5e-07 57.8 80 51.2
RcHm_v2.0_Chr1g0360911 Rosa chinensis HOM05D001873 ORTHO05D001976 4.5e-07 57.8 65 53.8
TAR633G0055 Trochodendron aralioides HOM05D001873 ORTHO05D001976 4.5e-07 57.8 30 86.7
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 7.7e-07 57.0 75 49.3
MD01G1087600 Malus domestica HOM05D001873 ORTHO05D001976 7.7e-07 57.0 64 51.6
Nn2g14174 Nelumbo nucifera HOM05D001873 ORTHO05D001976 7.7e-07 57.0 65 52.3
Sed0005634 Sechium edule HOM05D001873 ORTHO05D001976 7.7e-07 57.0 75 52.0
Duzib133G0410 Durio zibethinus HOM05D001873 ORTHO05D001976 1.0e-06 56.6 66 53.0
Gorai.009G401300 Gossypium raimondii HOM05D001873 ORTHO05D001976 1.0e-06 56.6 69 50.7
Hund16746 Selenicereus undatus HOM05D001873 ORTHO05D001976 1.0e-06 56.6 65 53.8
AUR62038886 Chenopodium quinoa HOM05D001873 ORTHO05D001976 1.3e-06 56.2 64 53.1
Lsat_1_v5_gn_2_119400 Lactuca sativa HOM05D001873 ORTHO05D001976 1.3e-06 56.2 28 92.9
THA.LOC104815893 Tarenaya hassleriana HOM05D001873 ORTHO05D001976 1.3e-06 56.2 65 55.4
unitig_22.g5830 Utricularia gibba HOM05D001873 ORTHO05D001976 1.3e-06 56.2 35 74.3
BcaB01g02311 Brassica carinata HOM05D001873 ORTHO05D001976 1.7e-06 55.8 64 53.1
DCAR_002979 Daucus carota HOM05D001873 ORTHO05D001976 2.2e-06 55.5 67 50.7
Lj9C604G17 Lonicera japonica HOM05D001873 ORTHO05D001976 2.2e-06 55.5 65 50.8
Medtr4g052940 Medicago truncatula HOM05D001873 ORTHO05D001976 2.2e-06 55.5 88 45.5
HPP92_001542 Vanilla planifolia HOM05D001873 ORTHO05D001976 2.2e-06 55.5 64 53.1
Ah.01g015310 Amaranthus hybridus HOM05D001873 ORTHO05D001976 2.9e-06 55.1 71 47.9
AT3G52660 Arabidopsis thaliana HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 51.5
BcaB01g00350 Brassica carinata HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 50.0
BcaC07g39632 Brassica carinata HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 50.0
A09p45730 Brassica napus HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 50.0
C08p27950 Brassica napus HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 50.0
BolC8t50407H Brassica oleracea HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 50.0
BraA09t40033Z Brassica rapa HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 50.0
CANSAT56G0254 Cannabis sativa HOM05D001873 ORTHO05D001976 2.9e-06 55.1 66 51.5
CANSAT64G0757 Cannabis sativa HOM05D001873 ORTHO05D001976 2.9e-06 55.1 67 55.2
Peaxi162Scf00404g00217 Petunia axillaris HOM05D001873 ORTHO05D001976 2.9e-06 55.1 65 53.8
BcaB02g07822 Brassica carinata HOM05D001873 ORTHO05D001976 3.8e-06 54.7 66 50.0
AUR62042473 Chenopodium quinoa HOM05D001873 ORTHO05D001976 3.8e-06 54.7 65 53.8
Gohir.A05G080400 Gossypium hirsutum HOM05D001873 ORTHO05D001976 3.8e-06 54.7 63 54.0
Gohir.D05G083400 Gossypium hirsutum HOM05D001873 ORTHO05D001976 3.8e-06 54.7 63 54.0
Gorai.009G085100 Gossypium raimondii HOM05D001873 ORTHO05D001976 3.8e-06 54.7 63 54.0
MD07G1157800 Malus domestica HOM05D001873 ORTHO05D001976 3.8e-06 54.7 66 50.0
Potri.014G104500 Populus trichocarpa HOM05D001873 ORTHO05D001976 3.8e-06 54.7 64 51.6
Aa31LG5G1120 Aethionema arabicum HOM05D001873 ORTHO05D001976 5.0e-06 54.3 34 67.6
CDE02G1369 Ceratophyllum demersum HOM05D001873 ORTHO05D001976 5.0e-06 54.3 64 51.6
AUR62006192 Chenopodium quinoa HOM05D001873 ORTHO05D001976 5.0e-06 54.3 72 48.6
COL.COLO4_06212 Corchorus olitorius HOM05D001873 ORTHO05D001976 5.0e-06 54.3 34 70.6
Hma1.2p1_0587F.1_g184330 Hydrangea macrophylla HOM05D001873 ORTHO05D001976 5.0e-06 54.3 69 52.2
Sabra04G0136500 Salix brachista HOM05D001873 ORTHO05D001976 5.0e-06 54.3 71 50.7
Nitab4.5_0002053g0020 Nicotiana tabacum HOM05D001873 ORTHO05D001976 6.5e-06 53.9 67 49.3
Nitab4.5_0003094g0040 Nicotiana tabacum HOM05D001873 ORTHO05D001976 6.5e-06 53.9 67 49.3
Oeu064428.1 Olea europaea HOM05D001873 ORTHO05D001976 6.5e-06 53.9 69 50.7
vmacro07412 Vaccinium macrocarpon HOM05D001873 ORTHO05D001976 6.5e-06 53.9 66 51.5
Gohir.D04G098900 Gossypium hirsutum HOM05D001873 ORTHO05D001976 8.5e-06 53.5 69 49.3


User provided reference genes

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