Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 0.0e+00 1418.7 725 100.0
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 0.0e+00 1412.1 725 99.4
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 0.0e+00 1258.0 715 91.0
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 8.2e-281 970.3 711 70.6
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 2.9e-270 935.3 717 68.2
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 7.9e-268 927.2 729 67.1
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 6.7e-267 924.1 730 66.8
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 9.7e-266 920.2 714 67.4
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.7e-265 918.3 717 67.1
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-264 916.4 719 66.5
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-264 916.4 719 66.5
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.7e-262 909.4 717 67.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.7e-262 909.4 761 65.2
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.2e-261 905.2 720 64.3
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 4.6e-260 901.4 703 66.9
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.0e-259 900.2 717 65.4
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.0e-259 900.2 717 65.4
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.0e-259 900.2 715 66.9
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 5.1e-259 897.9 716 66.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 8.8e-259 897.1 723 64.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 4.4e-258 894.8 717 66.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 7.4e-258 894.0 720 66.1
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 1.7e-257 892.9 715 63.9
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 3.7e-257 891.7 736 65.5
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 6.3e-257 891.0 723 64.2
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.1e-256 887.1 717 64.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.6e-255 885.6 717 65.4
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.0e-254 883.6 717 65.6
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 5.0e-254 881.3 719 65.0
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 4.2e-253 878.2 712 65.0
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.2e-252 876.7 733 64.9
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.6e-252 876.3 716 64.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.6e-252 876.3 708 63.4
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.0e-251 873.6 726 62.3
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.3e-251 872.5 714 64.1
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 2.3e-251 872.5 718 63.9
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 3.9e-251 871.7 712 64.7
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 6.7e-251 870.9 713 64.4
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 6.7e-251 870.9 715 64.8
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 8.8e-251 870.5 711 63.7
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.1e-250 870.2 713 63.3
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.2e-249 865.9 714 64.3
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.2e-249 865.9 714 63.9
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 5.3e-248 861.3 709 62.3
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 1.2e-247 860.1 715 63.2
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 4.5e-247 858.2 713 63.7
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 7.7e-247 857.4 710 62.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 1.5e-245 853.2 711 62.4
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 4.2e-245 851.7 718 63.0
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 5.5e-245 851.3 718 62.8
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 6.1e-244 847.8 710 62.1
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.1e-244 847.8 773 60.8
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.8e-243 846.3 714 63.0
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 3.0e-243 845.5 712 61.9
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.0e-243 845.5 709 62.9
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 4.0e-243 845.1 732 63.3
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.7e-241 839.7 725 62.6
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.7e-241 839.7 714 62.9
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 8.2e-241 837.4 714 62.6
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.5e-237 826.6 732 59.4
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 2.1e-236 822.8 709 60.8
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.4e-235 820.1 731 60.5
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 3.0e-235 818.9 714 62.0
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.2e-234 817.0 722 61.8
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 5.7e-234 814.7 726 61.3
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.0e-232 807.7 685 61.8
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 9.1e-232 807.4 733 59.8
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.6e-231 806.6 724 60.8
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.0e-231 806.2 689 62.7
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 1.0e-230 803.9 724 60.9
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.3e-230 803.5 723 61.1
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.3e-230 803.5 721 61.2
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 2.3e-230 802.7 717 60.9
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.3e-230 802.7 717 61.1
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 2.9e-230 802.4 724 60.8
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 3.8e-230 802.0 719 60.9
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 5.0e-230 801.6 724 60.8
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.1e-229 800.4 723 59.2
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 7.2e-229 797.7 717 60.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 2.3e-227 792.7 726 60.3
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.1e-224 782.3 762 55.5
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.9e-221 773.1 725 59.3
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.9e-221 773.1 725 59.3
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-220 770.4 728 58.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 8.0e-220 767.7 728 58.4
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.2e-218 763.8 718 57.8
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.2e-215 753.8 613 64.1
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.0e-215 753.1 715 55.8
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 6.6e-214 748.0 753 56.7
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 4.0e-211 738.8 717 57.6
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.2e-209 733.0 1038 43.2
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 4.6e-207 725.3 544 66.9
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 7.8e-207 724.5 726 56.5
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 2.8e-196 689.5 486 70.2
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 8.9e-195 684.5 729 50.8
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 5.4e-192 675.2 714 51.3
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 9.2e-192 674.5 856 46.0
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.2e-191 674.1 749 49.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 8.7e-190 667.9 545 64.2
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.5e-189 667.2 535 64.9
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.8e-187 660.2 714 53.6
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.1e-184 651.0 712 49.7
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 3.2e-184 649.4 710 52.3
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.8e-172 609.0 454 67.0
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 2.5e-160 570.1 535 55.7
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 6.0e-159 565.5 453 60.3
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 3.2e-152 543.1 732 42.2
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 6.1e-143 512.3 584 51.9
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.4e-141 505.4 609 48.8
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 4.1e-131 473.0 743 37.7
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 4.5e-130 469.5 763 37.5
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.6e-111 407.9 456 53.5
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.7e-108 397.9 572 39.7
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.1e-107 395.2 468 47.9
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.0e-106 391.0 404 56.9
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 4.3e-104 383.3 430 53.0
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 3.5e-90 337.0 333 55.6
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-89 335.5 370 52.2
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-88 330.5 305 57.4
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 5.6e-80 303.1 214 71.5
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 2.1e-79 301.2 691 34.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 5.8e-69 266.5 672 31.5
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-65 255.0 252 54.0
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 3.3e-64 250.8 359 47.1
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 1.1e-62 245.7 254 57.9
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 1.7e-60 238.4 290 49.7
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-59 234.6 265 55.5
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-58 231.5 186 63.4
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 3.9e-57 227.3 263 54.8
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 9.6e-56 222.6 263 54.0
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 3.7e-55 220.7 141 77.3
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.7e-52 211.8 296 42.6
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 6.7e-49 199.9 130 75.4
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-44 185.3 233 53.2
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 7.4e-40 169.9 113 66.4
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.0e-36 159.5 140 55.7
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 2.9e-36 157.9 169 50.3
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 6.5e-36 156.8 102 74.5
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.9e-35 155.2 102 73.5
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 2.5e-35 154.8 119 64.7
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 6.7e-33 146.7 107 63.6
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 8.8e-33 146.4 230 40.0
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 4.3e-32 144.1 88 83.0
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 2.2e-31 141.7 163 56.4
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.8e-31 140.6 87 75.9
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.8e-31 140.6 87 75.9
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.8e-31 140.6 87 75.9
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-30 139.4 120 57.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.1e-30 137.5 89 73.0
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 6.9e-30 136.7 139 51.1
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 6.9e-30 136.7 79 79.7
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 9.1e-30 136.3 77 92.2
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 4.5e-29 134.0 241 34.0
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 5.9e-29 133.7 244 36.1
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 7.7e-29 133.3 106 60.4
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.2e-28 131.7 79 75.9
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.1e-27 129.4 103 66.0
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 6.3e-23 113.6 77 80.5
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 8.2e-23 113.2 186 46.2
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 4.1e-22 110.9 59 88.1
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-21 109.0 62 77.4
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.9e-20 104.8 104 51.9
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 3.8e-20 104.4 107 53.3
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 3.8e-20 104.4 62 74.2
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 1.9e-19 102.1 56 78.6
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-19 101.3 100 53.0
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 4.2e-19 100.9 64 68.8
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 8.0e-18 96.7 106 47.2
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 8.0e-18 96.7 127 47.2
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 2.0e-16 92.0 56 69.6
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 4.4e-16 90.9 55 69.1
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 4.4e-16 90.9 56 67.9
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 9.7e-16 89.7 193 35.8
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-15 88.6 55 72.7
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 8.2e-15 86.7 248 34.7
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-14 85.1 63 61.9
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 9.1e-14 83.2 48 75.0
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 5.9e-13 80.5 132 38.6
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.9e-12 78.2 46 78.3
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 6.5e-12 77.0 94 51.1
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-11 76.3 69 63.8
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-11 75.5 196 36.7
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 2.5e-11 75.1 53 64.2
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 2.5e-11 75.1 53 64.2
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 4.7e-10 70.9 173 37.0
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 3.4e-08 64.7 42 71.4
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 9.8e-08 63.2 180 33.3
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 1.7e-07 62.4 36 72.2
SHI51181 Sapria himalayana HOM05D003729 ORTHO05D004384 7.0e-06 57.0 29 79.3
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 7.0e-06 57.0 34 73.5


User provided reference genes

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