Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 1.0e-176 623.2 308 100.0
Sabra11G0132900 Salix brachista HOM05D000440 ORTHO05D017783 1.2e-92 344.0 186 93.0
AUR62026226 Chenopodium quinoa HOM05D000002 ORTHO05D001134 9.8e-18 95.1 213 34.7
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.0e-14 85.1 112 45.5
Sp2g06970 Schrenkiella parvula HOM05D062719 ORTHO05D017783 3.9e-14 83.2 100 47.0
SpUn0014_0120 Schrenkiella parvula HOM05D062719 ORTHO05D017783 3.9e-14 83.2 100 47.0
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 7.3e-13 79.0 181 33.7
SEGI_14493 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.8e-12 77.0 71 47.9
CAN.G371.121 Capsicum annuum HOM05D000272 ORTHO05D000164 3.6e-12 76.6 121 42.1
Dinv01219 Davidia involucrata HOM05D000002 ORTHO05D000001 1.8e-11 74.3 71 47.9
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.3e-11 73.9 48 77.1
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 8.9e-11 72.0 193 32.6
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-10 71.6 71 50.7
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.2e-10 71.6 64 59.4
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.5e-10 71.2 66 53.0
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.0e-10 70.9 66 53.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.0e-10 70.9 76 51.3
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.6e-10 70.5 64 57.8
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 2.6e-10 70.5 111 41.4
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.6e-10 70.5 71 54.9
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.4e-10 70.1 71 50.7
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.4e-10 70.1 56 66.1
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 3.4e-10 70.1 56 66.1
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.4e-10 70.1 137 33.6
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 3.4e-10 70.1 71 54.9
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.4e-10 69.7 48 72.9
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 4.4e-10 69.7 48 72.9
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 4.4e-10 69.7 66 51.5
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 5.8e-10 69.3 48 70.8
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 5.8e-10 69.3 54 68.5
FvH4_3g13432 Fragaria vesca HOM05D000002 ORTHO05D000001 1.3e-09 68.2 118 38.1
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.3e-09 68.2 64 57.8
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.2e-09 67.4 71 47.9
CSS0006396 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-09 67.0 69 40.6
GSVIVG01014104001 Vitis vinifera HOM05D000043 ORTHO05D000223 2.9e-09 67.0 62 48.4
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 3.7e-09 66.6 65 47.7
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 4.9e-09 66.2 49 61.2
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.9e-09 66.2 49 61.2
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 6.4e-09 65.9 65 47.7
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.3e-09 65.5 48 60.4
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.3e-09 65.5 48 60.4
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 8.3e-09 65.5 49 63.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 8.3e-09 65.5 132 34.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.9e-08 64.3 39 74.4
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 2.4e-08 63.9 180 32.2
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 2.4e-08 63.9 40 77.5
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 3.2e-08 63.5 55 60.0
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.2e-08 63.5 46 65.2
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 4.1e-08 63.2 65 47.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 5.4e-08 62.8 194 30.9
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 5.4e-08 62.8 33 84.8
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 5.4e-08 62.8 33 84.8
CiPaw.11G068500 Carya illinoinensis HOM05D000002 ORTHO05D000001 7.1e-08 62.4 70 40.0
GSVIVG01013589001 Vitis vinifera HOM05D000002 ORTHO05D001134 7.1e-08 62.4 70 38.6
Ah.04g154410 Amaranthus hybridus HOM05D000002 ORTHO05D000001 9.2e-08 62.0 70 42.9
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 9.2e-08 62.0 38 76.3
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 9.2e-08 62.0 55 56.4
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 9.2e-08 62.0 55 56.4
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 9.2e-08 62.0 69 47.8
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.2e-07 61.6 33 84.8
ECA236G1135 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-07 61.6 195 28.2
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.2e-07 61.6 54 59.3
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.2e-07 61.6 50 54.0
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 1.2e-07 61.6 50 54.0
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.6e-07 61.2 51 58.8
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.6e-07 61.2 39 74.4
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.6e-07 61.2 60 53.3
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.6e-07 61.2 41 70.7
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.1e-07 60.8 41 70.7
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 2.1e-07 60.8 49 65.3
CSS0031425 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-07 60.8 69 37.7
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.1e-07 60.8 38 71.1
Manes.06G038551 Manihot esculenta HOM05D000002 ORTHO05D001544 2.1e-07 60.8 69 39.1
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.1e-07 60.8 82 39.0
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.1e-07 60.8 110 41.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 2.1e-07 60.8 33 84.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.1e-07 60.8 43 65.1
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.1e-07 60.8 33 84.8
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 2.7e-07 60.5 40 72.5
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 2.7e-07 60.5 40 72.5
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.7e-07 60.5 68 45.6
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 2.7e-07 60.5 49 55.1
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.5e-07 60.1 40 72.5
CSS0026966 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-07 60.1 69 37.7
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 3.5e-07 60.1 40 72.5
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 4.6e-07 59.7 33 81.8
CSS0022318 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.6e-07 59.7 69 37.7
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 4.6e-07 59.7 48 62.5
Ciclev10010735m.g Citrus clementina HOM05D000002 ORTHO05D017783 4.6e-07 59.7 89 40.4
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 4.6e-07 59.7 33 75.8
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 4.6e-07 59.7 42 64.3
Manes.01G000217 Manihot esculenta HOM05D000002 ORTHO05D010521 4.6e-07 59.7 55 43.6
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.0e-07 59.3 33 84.8
CANSAT54G2682 Cannabis sativa HOM05D000002 ORTHO05D024746 7.8e-07 58.9 86 33.7
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 7.8e-07 58.9 138 31.2
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 7.8e-07 58.9 48 58.3
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.0e-06 58.5 51 54.9
AUR62019119 Chenopodium quinoa HOM05D000002 ORTHO05D001134 1.0e-06 58.5 124 38.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.0e-06 58.5 43 62.8
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.0e-06 58.5 48 58.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-06 58.5 34 76.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.0e-06 58.5 33 75.8
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.0e-06 58.5 51 52.9
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.0e-06 58.5 40 70.0
CSS0005552 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 58.2 69 39.1
CSS0025606 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 58.2 69 39.1
CSS0038035 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 58.2 69 39.1
SHI23235 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-06 58.2 66 40.9
SHI44335 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-06 58.2 66 42.4
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.3e-06 58.2 33 78.8
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.3e-06 57.4 38 71.1
CSS0000004 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-06 57.4 87 35.6
CSS0015301 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-06 57.4 87 35.6
CSS0018707 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-06 57.4 87 35.6
CSS0022698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-06 57.4 87 35.6
CSS0028775 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-06 57.4 63 36.5
Cpa.g.sc906.1 Carica papaya HOM05D000002 ORTHO05D017783 2.3e-06 57.4 72 45.8
Manes.07G071208 Manihot esculenta HOM05D000002 ORTHO05D030083 2.3e-06 57.4 56 48.2
SHI31204 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 57.4 66 39.4
GSVIVG01021646001 Vitis vinifera HOM05D000002 ORTHO05D001134 2.3e-06 57.4 70 40.0
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.0e-06 57.0 33 75.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.0e-06 57.0 33 75.8
SHI37317 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-06 57.0 66 42.4
SHI43949 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-06 57.0 66 40.9
SHI50819 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-06 57.0 66 42.4
SHI51527 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-06 57.0 66 42.4
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 3.0e-06 57.0 46 58.7
CSS0048183 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.9e-06 56.6 87 35.6
Ca_23898_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.9e-06 56.6 115 33.9
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.9e-06 56.6 42 64.3
ECA248G3129 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-06 56.6 86 34.9
Sabra16G0095800 Salix brachista HOM05D000002 ORTHO05D001134 3.9e-06 56.6 73 35.6
SHI11989 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-06 56.6 66 39.4
Ah.03g146900 Amaranthus hybridus HOM05D000002 ORTHO05D001134 5.1e-06 56.2 63 39.7
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 5.1e-06 56.2 48 58.3
ECA240G4648 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.1e-06 56.2 86 34.9
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 5.1e-06 56.2 56 48.2
SHI32015 Sapria himalayana HOM05D000002 ORTHO05D000001 5.1e-06 56.2 66 39.4
SHI40375 Sapria himalayana HOM05D000002 ORTHO05D000001 5.1e-06 56.2 66 37.9
SHI49034 Sapria himalayana HOM05D000002 ORTHO05D000001 5.1e-06 56.2 66 37.9
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 5.1e-06 56.2 51 49.0
ECA234G1927 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.6e-06 55.8 86 34.9
ECA238G1847 Erigeron canadensis HOM05D000002 ORTHO05D001544 6.6e-06 55.8 86 34.9
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 6.6e-06 55.8 30 80.0
SHI46157 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-06 55.8 66 37.9
SHI46586 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-06 55.8 66 39.4
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 6.6e-06 55.8 34 73.5
FvH4_5g37183 Fragaria vesca HOM05D000002 ORTHO05D000001 8.6e-06 55.5 130 35.4
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 8.6e-06 55.5 50 50.0
SHI01896 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 37.9
SHI03984 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI06168 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI11637 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI23244 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI27613 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI30335 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI42048 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI43107 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI46837 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4
SHI53574 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-06 55.5 66 39.4


User provided reference genes

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