Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 0.0e+00 1719.1 1327 100.0
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 0.0e+00 1713.4 1327 99.8
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 0.0e+00 1145.2 1327 77.6
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 5.3e-294 1015.0 1327 67.0
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.9e-291 1006.5 1328 72.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.4e-270 936.4 1327 61.3
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.5e-248 861.7 1329 57.3
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 2.6e-240 836.6 1401 51.7
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 5.0e-228 795.8 1383 52.9
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.1e-214 749.6 1383 50.8
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.6e-213 747.7 1383 52.3
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-211 740.7 1386 52.7
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.2e-207 727.2 1329 49.3
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 7.1e-206 722.2 1387 48.6
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.7e-205 720.3 1469 54.0
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.6e-205 719.5 1384 50.7
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.0e-205 719.2 1115 49.6
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.8e-200 702.6 1536 43.3
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 8.4e-199 698.7 1363 53.7
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 3.5e-197 693.3 1330 47.3
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 3.9e-196 689.9 1299 51.0
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 4.0e-193 679.9 1382 49.9
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.4e-192 676.8 1332 52.0
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 7.6e-192 675.6 1335 50.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.3e-191 674.9 1379 52.2
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.9e-190 671.0 1380 49.3
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 7.1e-190 669.1 1384 50.3
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 4.6e-189 666.4 1332 49.5
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.7e-181 640.6 1383 50.3
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 3.3e-179 633.6 1582 43.3
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.3e-179 633.6 1379 51.0
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 9.6e-179 632.1 1331 48.6
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.5e-176 623.2 1392 50.8
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-174 618.6 1379 50.8
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.1e-172 609.8 1335 45.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 3.3e-171 607.1 1526 42.1
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 4.1e-169 600.1 1388 46.5
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 9.3e-166 589.0 1573 39.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 7.9e-165 585.9 1386 47.6
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 5.1e-164 583.2 1331 43.7
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 6.7e-164 582.8 1337 44.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.7e-162 578.2 1379 49.8
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.8e-162 577.4 1383 49.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.1e-161 573.9 1426 48.9
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 2.0e-160 571.2 1383 45.7
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.0e-160 571.2 1387 48.2
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 2.6e-160 570.9 1577 38.3
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.5e-159 566.2 1387 48.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.2e-158 563.9 1437 40.3
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 4.2e-158 563.5 1395 43.9
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 3.6e-157 560.5 1388 48.6
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.6e-155 554.3 1391 43.2
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.6e-155 554.3 1312 44.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.2e-154 549.3 1392 48.3
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.2e-154 549.3 1392 48.3
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.3e-151 542.0 1387 46.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.3e-151 542.0 1622 39.3
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.0e-151 540.0 1333 42.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 6.5e-151 539.7 1332 42.9
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 7.4e-147 526.2 1331 42.8
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 5.0e-143 513.5 1636 33.6
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.7e-141 506.9 1525 38.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.2e-139 502.3 1387 45.4
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.7e-136 489.6 1372 44.4
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 2.9e-135 487.6 1385 43.4
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 5.5e-134 483.4 706 44.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.2e-131 475.7 1329 44.7
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 3.3e-126 457.6 1385 44.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.1e-125 454.9 1565 39.8
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 4.0e-124 450.7 784 59.2
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 6.3e-122 443.4 624 47.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 6.3e-122 443.4 1567 36.1
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 8.3e-122 443.0 1277 36.6
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 4.1e-121 440.7 1351 40.3
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.0e-120 438.3 1351 39.5
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.3e-119 434.9 1466 30.1
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.5e-118 431.4 1364 42.9
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.2e-112 412.5 1396 44.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 4.6e-112 410.6 1678 32.7
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 5.6e-110 403.7 1405 44.3
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.3e-108 398.3 1359 38.6
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 8.9e-108 396.4 1386 45.0
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.5e-107 395.6 1385 33.4
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.3e-102 377.9 622 45.5
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.1e-101 375.2 1330 39.8
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 5.2e-100 370.5 1444 38.4
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.5e-99 366.7 1334 41.2
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.3e-94 350.9 1330 32.9
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.6e-93 349.0 1328 38.3
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.1e-92 346.3 859 43.8
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.4e-82 310.1 1887 31.1
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 5.6e-78 297.4 1142 40.4
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 6.4e-74 283.9 1386 35.6
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.0e-67 262.3 1355 29.5
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-64 252.7 597 34.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.3e-63 248.8 1374 31.4
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 8.2e-61 240.4 289 51.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.8e-60 239.2 356 46.6
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 5.5e-57 227.6 302 48.3
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 7.4e-54 217.2 381 41.2
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-53 216.1 1049 26.5
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-51 209.9 334 43.4
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.9e-50 205.3 588 31.6
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.5e-50 204.1 846 29.1
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 4.2e-49 201.4 639 34.3
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.0e-46 192.6 1367 28.3
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.3e-46 191.8 1330 36.2
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 4.3e-46 191.4 416 36.1
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.8e-44 186.0 1199 28.4
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.4e-44 185.7 315 44.1
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.5e-43 183.0 1292 24.1
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.3e-42 179.9 512 32.6
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.3e-42 179.9 417 35.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 7.2e-41 174.1 281 43.1
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.0e-39 170.2 1409 36.7
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 9.7e-38 163.7 335 42.4
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.8e-36 159.5 240 44.6
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.3e-36 157.9 438 32.4
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.2e-35 156.8 1335 28.8
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.9e-34 152.1 1392 37.3
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 4.2e-33 148.3 704 26.6
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.2e-33 147.5 403 32.0
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.2e-33 147.5 403 32.0
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 6.1e-32 144.4 700 26.6
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.8e-31 142.9 287 35.9
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 6.7e-31 141.0 615 34.1
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.0e-30 139.4 281 42.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.6e-30 139.0 403 31.8
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.8e-29 135.6 204 46.1
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.8e-29 135.6 707 24.2
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-28 133.7 361 32.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.8e-28 132.9 270 43.3
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.8e-28 132.9 411 31.1
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 7.0e-28 131.0 1503 35.7
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.0e-27 129.4 173 52.6
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.3e-26 126.7 1386 37.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.3e-26 126.7 201 45.8
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.2e-26 125.9 598 25.6
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.5e-25 123.2 120 63.3
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 4.2e-25 121.7 342 36.0
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 2.7e-24 119.0 115 60.9
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.4e-23 116.7 352 36.9
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-22 112.8 1504 35.2
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-22 112.8 286 38.5
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 4.8e-21 108.2 352 36.4
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.1e-20 105.5 157 56.1
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 9.1e-20 104.0 309 38.2
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 9.1e-20 104.0 309 38.2
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 5.9e-19 101.3 666 25.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.2e-18 99.4 1495 35.1
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 8.5e-18 97.4 270 37.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.9e-17 96.3 561 27.1
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.5e-17 95.9 323 32.8
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 3.2e-17 95.5 440 22.7
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 5.5e-17 94.7 89 62.9
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.6e-16 92.0 266 32.3
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.0e-16 90.9 266 32.0
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 5.2e-15 88.2 506 24.5
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.2e-14 87.0 108 50.0
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 1.4e-12 80.1 228 29.4
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.1e-12 79.0 348 29.0
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 7.0e-12 77.8 593 26.3
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 9.1e-12 77.4 484 23.6
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 3.5e-11 75.5 593 25.6
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 3.8e-10 72.0 328 34.1
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.1e-09 70.5 599 22.2
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.2e-09 68.6 458 24.7
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 6.1e-08 64.7 126 36.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 8.0e-08 64.3 53 67.9
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 8.0e-08 64.3 109 41.3
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 4.0e-07 62.0 146 35.6
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.2e-07 61.6 75 50.7
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 5.2e-07 61.6 308 27.9
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-06 60.5 113 38.9
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 2.6e-06 59.3 220 25.5
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 4.4e-06 58.5 103 40.8
CiPaw.03G080900 Carya illinoinensis HOM05D002721 ORTHO05D002919 7.5e-06 57.8 466 22.3
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.5e-06 57.8 179 30.2


User provided reference genes

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